RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 COQ3Q9NZJ6 369 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 ANAPC5Q9UJX4 755 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 DUSP12Q9UNI6 340 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 CCL27Q9Y4X3 112 aa4.4□□□□□ -1.71
HMGB1-204ENST00000399489 EIF4G1Q04637 1599 aaKnown RBP4.39□□□□□ -1.71
HMGB1-204ENST00000399489 A0A1W2PQ09 198 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 TMEM110-MUSTN1A8MSY1 372 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 PSMA7O14818 248 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 ALDH1A2O94788 518 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 NTSR2O95665 410 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 APBB3O95704 486 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 ALADP13716 330 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 HK1P19367 917 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 HLA-DPA1P20036 260 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 KLRK1P26718 216 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 GP5P40197 560 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 PIK3CGP48736 1102 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 WNT3AP56704 352 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 NRG3P56975 720 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 YBEYP58557 167 aaPredicted RBP4.39□□□□□ -1.71
HMGB1-204ENST00000399489 ACTN3Q08043 901 aaPredicted RBP4.39□□□□□ -1.71
HMGB1-204ENST00000399489 NFE2L1Q14494 772 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 HABP2Q14520 560 aaPredicted RBP4.39□□□□□ -1.71
HMGB1-204ENST00000399489 MST1LQ2TV78 715 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 PLEKHS1Q5SXH7 462 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 DCAF12L1Q5VU92 463 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 SYT13Q7L8C5 426 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.39□□□□□ -1.71
HMGB1-204ENST00000399489 SCN4BQ8IWT1 228 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 YAF2Q8IY57 180 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 KIAA2013Q8IYS2 634 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 ZGPATQ8N5A5 531 aaKnown RBP4.39□□□□□ -1.71
HMGB1-204ENST00000399489 WDTC1Q8N5D0 677 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 TMCO5AQ8N6Q1 288 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 GSDMBQ8TAX9 411 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 SCFD2Q8WU76 684 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 TNPO1Q92973 898 aaKnown RBP4.39□□□□□ -1.71
HMGB1-204ENST00000399489 VPS16Q9H269 839 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 DNAJB9Q9UBS3 223 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 UBA2Q9UBT2 640 aaPredicted RBP4.39□□□□□ -1.71
HMGB1-204ENST00000399489 KCND3Q9UK17 655 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 KDM3AQ9Y4C1 1321 aa4.39□□□□□ -1.71
HMGB1-204ENST00000399489 SYNJ2BP-COX16A0A087WUM0 186 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 A0A087WWL8 130 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 FAM90A18PA6NE21 464 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 FAM90A16PA6NEW6 464 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 FAM90A9PA6NNJ1 464 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 FAM90A5PA8MXJ8 464 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 H0YAE9 185 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 TP73O15350 636 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 TGFB1I1O43294 461 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 HNRNPRO43390 633 aaKnown RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 ZBTB14O43829 449 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 KERAO60938 352 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 ENTPD3O75355 529 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 SCAF4O95104 1147 aaKnown RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 CCNDBP1O95273 360 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 NUDT3O95989 172 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 TFRCP02786 760 aaKnown RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 AMY1AP04745 511 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 FAM90A15PP0C7V4 464 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 FAM90A14PP0C7W9 464 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 EEF2P13639 858 aaKnown RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 LAG3P18627 525 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 MAPK3P27361 379 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 ECHS1P30084 290 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 CASQ1P31415 396 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 KCNJ5P48544 419 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 TAP1Q03518 808 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 MYO1EQ12965 1108 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 PTP4A2Q12974 167 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 LASP1Q14847 261 aaKnown RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 MRNIPQ6NTE8 343 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 TRAT1Q6PIZ9 186 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 FAM180AQ6UWF9 173 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 LRRC55Q6ZSA7 311 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 LURAP1LQ8IV03 231 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 RHOT2Q8IXI1 618 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 MPP5Q8N3R9 675 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 MIGA1Q8NAN2 632 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 ZBTB8BQ8NAP8 495 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 TDRD5Q8NAT2 981 aaKnown RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 NCSTNQ92542 709 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 HSPH1Q92598 858 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 STAMQ92783 540 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 AK8Q96MA6 479 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 ATP6V0BQ99437 205 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 CITED2Q99967 270 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 PHF7Q9BWX1 381 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 MAK16Q9BXY0 300 aaKnown RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 BRD8Q9H0E9 1235 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 COPS7BQ9H9Q2 264 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 SNX15Q9NRS6 342 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 KCTD5Q9NXV2 234 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 SELENONQ9NZV5 590 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 ZNHIT2Q9UHR6 403 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 PACSIN3Q9UKS6 424 aa4.38□□□□□ -1.71
HMGB1-204ENST00000399489 CORO1CQ9ULV4 474 aaPredicted RBP4.38□□□□□ -1.71
HMGB1-204ENST00000399489 ARHGAP10A1A4S6 786 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms