RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 ZNF217O75362 1048 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 GABBR2O75899 941 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 CCDC172P0C7W6 258 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 RALAP11233 206 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 PRKCHP24723 683 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 HOXD12P35452 270 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 PSEN1P49768 467 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 TKTL1P51854 596 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 COPAP53621 1224 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 YWHAGP61981 247 aaKnown RBP eCLIP10.78□□□□□ -0.68
NEDD8-202ENST00000396828 APBA1Q02410 837 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 ENPP2Q13822 863 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 RAPGEF1Q13905 1077 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 SFMBT2Q5VUG0 894 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 ARHGAP17Q68EM7 881 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 CACUL1Q86Y37 369 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 RGL4Q8IZJ4 473 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 PPM1KQ8N3J5 372 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 TC2NQ8N9U0 490 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 CEP76Q8TAP6 659 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 SYN2Q92777 582 aaPredicted RBP10.78□□□□□ -0.68
NEDD8-202ENST00000396828 TOE1Q96GM8 510 aaKnown RBP10.78□□□□□ -0.68
NEDD8-202ENST00000396828 DNAJC7Q99615 494 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 BAG1Q99933 345 aaPredicted RBP10.78□□□□□ -0.68
NEDD8-202ENST00000396828 GPR174Q9BXC1 333 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 NAA15Q9BXJ9 866 aaKnown RBP10.78□□□□□ -0.68
NEDD8-202ENST00000396828 STK33Q9BYT3 514 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 ULBP1Q9BZM6 244 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 UBE2TQ9NPD8 197 aaPredicted RBP10.78□□□□□ -0.68
NEDD8-202ENST00000396828 WSB2Q9NYS7 404 aaPredicted RBP10.78□□□□□ -0.68
NEDD8-202ENST00000396828 MARCH2Q9P0N8 246 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 THAP10Q9P2Z0 257 aaPredicted RBP10.78□□□□□ -0.68
NEDD8-202ENST00000396828 FHOD1Q9Y613 1164 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 CACNA1GO43497 2377 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 FAM208BQ5VWN6 2430 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 NUMA1Q14980 2115 aa10.78□□□□□ -0.68
NEDD8-202ENST00000396828 CKAP5Q14008 2032 aa10.77□□□□□ -0.68
NEDD8-202ENST00000396828 LRRC53A6NM62 1247 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 UPK3BL1B0FP48 263 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 UPK3BL2E5RIL1 263 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 GFRA2O00451 464 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 SH3BP5O60239 455 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 TSPAN3O60637 253 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 OPHN1O60890 802 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 CALCAP01258 141 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 HLA-EP13747 358 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 HOXB3P14651 431 aaPredicted RBP10.77□□□□□ -0.69
NEDD8-202ENST00000396828 TBXAS1P24557 533 aaPredicted RBP10.77□□□□□ -0.69
NEDD8-202ENST00000396828 CD6P30203 668 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 STAT1P42224 750 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 TPMTP51580 245 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 SGSHP51688 502 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 ATXN3P54252 364 aaPredicted RBP10.77□□□□□ -0.69
NEDD8-202ENST00000396828 COG7P83436 770 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 BNC1Q01954 994 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 GCNT1Q02742 428 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 PDE4CQ08493 712 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 ZNF234Q14588 700 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 ARID5BQ14865 1188 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 GOLGA7BQ2TAP0 167 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 PM20D1Q6GTS8 502 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 DPY19L2P1Q6NXN4 242 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 TMPRSS6Q8IU80 811 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 CHCHD4Q8N4Q1 142 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 ANKRD52Q8NB46 1076 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 UBA3Q8TBC4 463 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 BAP1Q92560 729 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 EDEM1Q92611 657 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 FAXDC2Q96IV6 333 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 SLC32A1Q9H598 525 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 PRDM16Q9HAZ2 1276 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 IL21RQ9HBE5 538 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 ITM2CQ9NQX7 267 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 DNAAF2Q9NVR5 837 aaKnown RBP10.77□□□□□ -0.69
NEDD8-202ENST00000396828 ELOVL2Q9NXB9 296 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 USP36Q9P275 1121 aaKnown RBP10.77□□□□□ -0.69
NEDD8-202ENST00000396828 SFMBT1Q9UHJ3 866 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 TSPAN16Q9UKR8 245 aa10.77□□□□□ -0.69
NEDD8-202ENST00000396828 MUC22E2RYF6 1773 aaPredicted RBP10.76□□□□□ -0.69
NEDD8-202ENST00000396828 SRRM3A6NNA2 597 aaPredicted RBP10.76□□□□□ -0.69
NEDD8-202ENST00000396828 YJEFN3A6XGL0 299 aa10.76□□□□□ -0.69
NEDD8-202ENST00000396828 E7ENQ6 273 aa10.76□□□□□ -0.69
NEDD8-202ENST00000396828 F8VZ95 297 aa10.76□□□□□ -0.69
NEDD8-202ENST00000396828 RNF225M0QZC1 329 aaPredicted RBP10.76□□□□□ -0.69
NEDD8-202ENST00000396828 TAF4O00268 1085 aa10.76□□□□□ -0.69
NEDD8-202ENST00000396828 PIK3R2O00459 728 aa10.76□□□□□ -0.69
NEDD8-202ENST00000396828 NDUFS2O75306 463 aa10.76□□□□□ -0.69
NEDD8-202ENST00000396828 ZBED1O96006 694 aa10.76□□□□□ -0.69
NEDD8-202ENST00000396828 FERP16591 822 aa10.76□□□□□ -0.69
NEDD8-202ENST00000396828 CHKAP35790 457 aa10.76□□□□□ -0.69
NEDD8-202ENST00000396828 DPP6P42658 865 aa10.76□□□□□ -0.69
NEDD8-202ENST00000396828 JAM2P57087 298 aa10.76□□□□□ -0.69
NEDD8-202ENST00000396828 YWHAEP62258 255 aaKnown RBP10.76□□□□□ -0.69
NEDD8-202ENST00000396828 ADIGQ0VDE8 80 aa10.76□□□□□ -0.69
NEDD8-202ENST00000396828 GRIK2Q13002 908 aa10.76□□□□□ -0.69
NEDD8-202ENST00000396828 CUL2Q13617 745 aa10.76□□□□□ -0.69
NEDD8-202ENST00000396828 DRAP1Q14919 205 aaPredicted RBP10.76□□□□□ -0.69
NEDD8-202ENST00000396828 TRIP4Q15650 581 aaPredicted RBP10.76□□□□□ -0.69
NEDD8-202ENST00000396828 ASIC2Q16515 512 aa10.76□□□□□ -0.69
NEDD8-202ENST00000396828 ARHGAP44Q17R89 818 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms