RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 M0QYT0 321 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 PAGE1O75459 146 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 IGLV3-19P01714 112 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 KRT7P08729 469 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 CCDC175P0C221 793 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 GJA1P17302 382 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 SLC11A2P49281 568 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 ARID5AQ03989 594 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 SPA17Q15506 151 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 CCDC85BQ15834 202 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 ITPRIPL2Q3MIP1 535 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 RAB6CQ53S08 254 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 SH3PXD2AQ5TCZ1 1133 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 NYAP1Q6ZVC0 841 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 TEX26Q8N6G2 289 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 ACRBPQ8NEB7 543 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 CASKIN2Q8WXE0 1202 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 MAML1Q92585 1016 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 ISG20Q96AZ6 181 aaKnown RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 MYO19Q96H55 970 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 KCTD15Q96SI1 283 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 RPP25Q9BUL9 199 aaKnown RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 RAB6CQ9H0N0 254 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 AMACRQ9UHK6 382 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 RASAL2Q9UJF2 1139 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 MAGED2Q9UNF1 606 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 EML5Q05BV3 1969 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 CCDC66A2RUB6 948 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 BHMG1C9JSJ3 638 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 BUB1BO60566 1050 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 CLDN11O75508 207 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 PEX11BO96011 259 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 ADH1CP00326 375 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 SRPRAP08240 638 aaKnown RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 KIR2DL1P43626 348 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 HARS2P49590 506 aaKnown RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 EFEMP1Q12805 493 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 DPYSL3Q14195 570 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 C15orf59Q2T9L4 293 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 CWF19L1Q69YN2 538 aaKnown RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 DRICH1Q6PGQ1 229 aaPredicted RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 LZTR1Q8N653 840 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 EDEM1Q92611 657 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 MRGPRX3Q96LB0 322 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 SNRNP25Q9BV90 132 aaKnown RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 WDCPQ9H6R7 721 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 PCDH18Q9HCL0 1135 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 DUS2Q9NX74 493 aaKnown RBP7.25□□□□□ -1.25
LIMA1-202ENST00000394943 PLXNA2O75051 1894 aa7.25□□□□□ -1.25
LIMA1-202ENST00000394943 A0A1B0GVM2 712 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 TCAF2A6NFQ2 919 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 E9PAM4 449 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 GPR37L1O60883 481 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 VIPR2P41587 438 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 YBEYP58557 167 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-202ENST00000394943 TAS2R40P59535 323 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 AUHQ13825 339 aaKnown RBP7.24□□□□□ -1.25
LIMA1-202ENST00000394943 MLF2Q15773 248 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-202ENST00000394943 ARL13BQ3SXY8 428 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 PAPD7Q5XG87 772 aaKnown RBP7.24□□□□□ -1.25
LIMA1-202ENST00000394943 FBXL22Q6P050 247 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 METTL3Q86U44 580 aaKnown RBP7.24□□□□□ -1.25
LIMA1-202ENST00000394943 ARHGAP12Q8IWW6 846 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 GJD3Q8N144 294 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 CCAR2Q8N163 923 aaKnown RBP7.24□□□□□ -1.25
LIMA1-202ENST00000394943 RTL3Q8N8U3 475 aaKnown RBP7.24□□□□□ -1.25
LIMA1-202ENST00000394943 HCAR2Q8TDS4 363 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 RTP4Q96DX8 246 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 ZNF599Q96NL3 588 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 NELL2Q99435 816 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 BRD8Q9H0E9 1235 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 TKTL2Q9H0I9 626 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 GKN1Q9NS71 199 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 DDIT4Q9NX09 232 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 ALG6Q9Y672 507 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 CEP290O15078 2479 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 WASH3PC4AMC7 463 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 K7EQS6 105 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 APOEP02649 317 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 ADH5P11766 374 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 DRD1P21728 446 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 PSMA2P25787 234 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 GJA4P35212 333 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 CDKN2BP42772 138 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 SGSHP51688 502 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 DGKKQ5KSL6 1271 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 ARMC3Q5W041 872 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 SND1Q7KZF4 910 aaKnown RBP eCLIP7.24□□□□□ -1.25
LIMA1-202ENST00000394943 ADIPOR2Q86V24 386 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 RHOT1Q8IXI2 618 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 EMC1Q8N766 993 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 ING5Q8WYH8 240 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 IGSF8Q969P0 613 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 C19orf43Q9BQ61 176 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 CEP44Q9C0F1 390 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 FBRSQ9HAH7 460 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 DONSONQ9NYP3 566 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 SLC12A6Q9UHW9 1150 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 ANAPC7Q9UJX3 599 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 PRUNE2Q8WUY3 3088 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms