RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 OSBPL1AQ9BXW6 950 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 CTTNBP2NLQ9P2B4 639 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 DNMT3LQ9UJW3 386 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 ZNF180Q9UJW8 692 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 MAFBQ9Y5Q3 323 aaPredicted RBP8.35□□□□□ -1.07
LIMS1-203ENST00000393310 A0A1W2PRU2 124 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 ANKRD65E5RJM6 399 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 CDC27P30260 824 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 TRIM23P36406 574 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 ATXN1P54253 815 aaKnown RBP8.35□□□□□ -1.07
LIMS1-203ENST00000393310 MPPE1Q53F39 396 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 ANKS1BQ7Z6G8 1248 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 DCP2Q8IU60 420 aaKnown RBP8.35□□□□□ -1.07
LIMS1-203ENST00000393310 TM6SF1Q9BZW5 370 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 RAD21L1Q9H4I0 556 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 IL17RBQ9NRM6 502 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 PSD3Q9NYI0 1048 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 RBAKQ9NYW8 714 aaPredicted RBP8.35□□□□□ -1.07
LIMS1-203ENST00000393310 RAPGEFL1Q9UHV5 662 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 ADAM21Q9UKJ8 722 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 TBC1D3DA0A087WVF3 549 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 TBC1D3IA0A087WXS9 549 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 TBC1D3EA0A087X179 549 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 TBC1D3KA0A087X1G2 549 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.35□□□□□ -1.07
LIMS1-203ENST00000393310 TBC1D3FA6NER0 549 aaPredicted RBP8.35□□□□□ -1.07
LIMS1-203ENST00000393310 TBC1D3LB9A6J9 549 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 SLC16A4O15374 487 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 KRT8P05787 483 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 TBC1D3HP0C7X1 549 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 SOX5P35711 763 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 FAM189BP81408 668 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 SEMG2Q02383 582 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 KDSRQ06136 332 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 CALCOCO2Q13137 446 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 ZNF177Q13360 481 aaPredicted RBP8.35□□□□□ -1.07
LIMS1-203ENST00000393310 TBC1D3GQ6DHY5 549 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 TBC1D3CQ6IPX1 549 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 TBC1D3Q8IZP1 549 aaPredicted RBP8.35□□□□□ -1.07
LIMS1-203ENST00000393310 CSGALNACT2Q8N6G5 542 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 ZNF248Q8NDW4 579 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 CASD1Q96PB1 797 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 RBSNQ9H1K0 784 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 SERHL2Q9H4I8 314 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 WDFY3Q8IZQ1 3526 aa8.35□□□□□ -1.07
LIMS1-203ENST00000393310 WDR27A2RRH5 827 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 J3QKU1 62 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 MSH4O15457 936 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 LZTS3O60299 673 aaPredicted RBP8.34□□□□□ -1.07
LIMS1-203ENST00000393310 S100A9P06702 114 aaKnown RBP8.34□□□□□ -1.07
LIMS1-203ENST00000393310 PNMA6AP0CW24 399 aaPredicted RBP8.34□□□□□ -1.07
LIMS1-203ENST00000393310 PLS3P13797 630 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 PRKACBP22694 351 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 EEF1GP26641 437 aaKnown RBP8.34□□□□□ -1.07
LIMS1-203ENST00000393310 ARL1P40616 181 aaPredicted RBP8.34□□□□□ -1.07
LIMS1-203ENST00000393310 HALP42357 657 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 KRT6CP48668 564 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 NPEPPSP55786 919 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 STARD6P59095 220 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 ZSCAN23Q3MJ62 389 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 RAB42Q8N4Z0 105 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 MAP4K1Q92918 833 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 B3GALT6Q96L58 329 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 LRGUKQ96M69 825 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 CCDC42Q96M95 316 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 TMEM74Q96NL1 305 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 SLC13A1Q9BZW2 595 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 OSBPL3Q9H4L5 887 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 ABCB6Q9NP58 842 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 DDX43Q9NXZ2 648 aaKnown RBP8.34□□□□□ -1.07
LIMS1-203ENST00000393310 HSFX1Q9UBD0 423 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 SPEF1Q9Y4P9 236 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 COL4A5P29400 1685 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 ADAMTS7Q9UKP4 1686 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 ZSCAN22P10073 491 aaPredicted RBP8.34□□□□□ -1.07
LIMS1-203ENST00000393310 SERPINB8P50452 374 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 RAP1GDS1P52306 607 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 EPHB1P54762 984 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 ROR1Q01973 937 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 TRIP6Q15654 476 aaKnown RBP8.34□□□□□ -1.07
LIMS1-203ENST00000393310 SH3PXD2AQ5TCZ1 1133 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 NAPEPLDQ6IQ20 393 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 IRGCQ6NXR0 463 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 TOGARAM2Q6ZUX3 1019 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 PIGOQ8TEQ8 1089 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 BTN2A2Q8WVV5 523 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 ANKRD7Q92527 254 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 ZSCAN16Q9H4T2 348 aaPredicted RBP8.34□□□□□ -1.07
LIMS1-203ENST00000393310 FANCEQ9HB96 536 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 CDHR5Q9HBB8 845 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 GID8Q9NWU2 228 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 RRN3Q9NYV6 651 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 CFAP97Q9P2B7 532 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 VWA3AA6NCI4 1184 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 SLC28A2O43868 658 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 CNTN5O94779 1100 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 NPPAP01160 153 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 EPHX1P07099 455 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 NCAM1P13591 858 aa8.34□□□□□ -1.07
LIMS1-203ENST00000393310 CTNNA2P26232 953 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms