RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 BNIPLQ7Z465 357 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 CCDC25Q86WR0 208 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 DYDC1Q8WWB3 177 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 TBC1D31Q96DN5 1066 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 TLR9Q9NR96 1032 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 SFMBT1Q9UHJ3 866 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 AP4E1Q9UPM8 1137 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 LZTS1Q9Y250 596 aa12.85□□□□□ -0.35
CIITA-202ENST00000381835 PDE4DIPQ5VU43 2346 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 hCG_1818297A0A087WSY0 165 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 HIDE1A8MVS5 230 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 MDM4O15151 490 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 KLRC2P26717 231 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 COILP38432 576 aaPredicted RBP12.84□□□□□ -0.35
CIITA-202ENST00000381835 PBX2P40425 430 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 TWF1Q12792 350 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 MMRN1Q13201 1228 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 TBC1D1Q86TI0 1168 aaPredicted RBP12.84□□□□□ -0.35
CIITA-202ENST00000381835 TCEAL8Q8IYN2 117 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 ARHGAP18Q8N392 663 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 TEKT4Q8WW24 435 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 CASP10Q92851 521 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 RNF34Q969K3 372 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 RUNDC3BQ96NL0 473 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 WDR6Q9NNW5 1121 aaKnown RBP12.84□□□□□ -0.35
CIITA-202ENST00000381835 TLR8Q9NR97 1041 aaKnown RBP12.84□□□□□ -0.35
CIITA-202ENST00000381835 HSFX1Q9UBD0 423 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 GRM6O15303 877 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 F9P00740 461 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 ADH1AP07327 375 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 DYNLT1P63172 113 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 KLF1Q13351 362 aaPredicted RBP12.84□□□□□ -0.35
CIITA-202ENST00000381835 DPYSL3Q14195 570 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 SIX1Q15475 284 aaPredicted RBP12.84□□□□□ -0.35
CIITA-202ENST00000381835 BEND5Q7L4P6 421 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 MAP7D3Q8IWC1 876 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 PYROXD2Q8N2H3 581 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 C1orf54Q8WWF1 131 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 ART4Q93070 314 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 PGAP3Q96FM1 320 aaPredicted RBP12.84□□□□□ -0.35
CIITA-202ENST00000381835 KLHL5Q96PQ7 755 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 FAM118BQ9BPY3 351 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 CERS4Q9HA82 394 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 HOMER3Q9NSC5 361 aa12.84□□□□□ -0.35
CIITA-202ENST00000381835 YBX2Q9Y2T7 364 aaKnown RBP12.84□□□□□ -0.35
CIITA-202ENST00000381835 CFAP73A6NFT4 308 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 C2orf71A6NGG8 1288 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 C5orf67F2Z3F1 127 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 MSI1O43347 362 aaKnown RBP12.83□□□□□ -0.36
CIITA-202ENST00000381835 TJP3O95049 919 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 CSH1P0DML2 217 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 CSH2P0DML3 217 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 CALCOCO2Q13137 446 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 VEPH1Q14D04 833 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 RFX6Q8HWS3 928 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 MRPL43Q8N983 215 aaKnown RBP12.83□□□□□ -0.36
CIITA-202ENST00000381835 MAIP1Q8WWC4 291 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 ATG4AQ8WYN0 398 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 HAUS1Q96CS2 278 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 ZNF512Q96ME7 567 aaPredicted RBP12.83□□□□□ -0.36
CIITA-202ENST00000381835 TGS1Q96RS0 853 aaKnown RBP12.83□□□□□ -0.36
CIITA-202ENST00000381835 TTLL2Q9BWV7 592 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 EMILIN2Q9BXX0 1053 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 MAK16Q9BXY0 300 aaKnown RBP12.83□□□□□ -0.36
CIITA-202ENST00000381835 WDCPQ9H6R7 721 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 PCDH18Q9HCL0 1135 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 ABCF3Q9NUQ8 709 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 COMMD8Q9NX08 183 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 FZD10Q9ULW2 581 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 R3HDM2Q9Y2K5 976 aaKnown RBP12.83□□□□□ -0.36
CIITA-202ENST00000381835 PCDHA11Q9Y5I1 949 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 INSL5Q9Y5Q6 135 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 COL4A4P53420 1690 aaPredicted RBP12.83□□□□□ -0.36
CIITA-202ENST00000381835 CST8O60676 142 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 TBX18O95935 607 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 RB1P06400 928 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 L1CAMP32004 1257 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 IRS1P35568 1242 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 KCNJ1P48048 391 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 ARSEP51690 589 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 SNX1Q13596 522 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 LRRC14Q15048 493 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 PDK2Q15119 407 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 TNFAIP8L3Q5GJ75 292 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 EXOC3L1Q86VI1 746 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 MGARPQ8TDB4 240 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 CEP295NLQ96MC4 621 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 ROPN1BQ9BZX4 212 aaPredicted RBP12.83□□□□□ -0.36
CIITA-202ENST00000381835 SMOC2Q9H3U7 446 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 ROPN1Q9HAT0 212 aaPredicted RBP12.83□□□□□ -0.36
CIITA-202ENST00000381835 ANLNQ9NQW6 1124 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 DONSONQ9NYP3 566 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 FBXW11Q9UKB1 542 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 SUFUQ9UMX1 484 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 IRAK3Q9Y616 596 aa12.83□□□□□ -0.36
CIITA-202ENST00000381835 MTCL1Q9Y4B5 1905 aaKnown RBP12.83□□□□□ -0.36
CIITA-202ENST00000381835 DOCK6Q96HP0 2047 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 IRAK2O43187 625 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 SNX3O60493 162 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 LPXNO60711 386 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms