RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 PRPSAP2O60256 369 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 MPP3Q13368 585 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 EMC2Q15006 297 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 C1QTNF12Q5T7M4 302 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 TMEM198Q66K66 360 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 POTEHQ6S545 545 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 NAPRTQ6XQN6 538 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 ZNF534Q76KX8 674 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 CDR2LQ86X02 465 aaPredicted RBP16.29■□□□□ 0.2
CKAP4-201ENST00000378026 MYO1HQ8N1T3 1032 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 KBTBD7Q8WVZ9 684 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 ZNF668Q96K58 619 aaPredicted RBP16.29■□□□□ 0.2
CKAP4-201ENST00000378026 KLHL32Q96NJ5 620 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 DHX33Q9H6R0 707 aaKnown RBP16.29■□□□□ 0.2
CKAP4-201ENST00000378026 SUDS3Q9H7L9 328 aaPredicted RBP16.29■□□□□ 0.2
CKAP4-201ENST00000378026 PFDN4Q9NQP4 134 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 MYO18AQ92614 2054 aaKnown RBP16.29■□□□□ 0.2
CKAP4-201ENST00000378026 RNASEH2AO75792 299 aaKnown RBP16.29■□□□□ 0.2
CKAP4-201ENST00000378026 STAMBPO95630 424 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 CPA3P15088 417 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 PDGFRAP16234 1089 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 TGFB2P61812 414 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 PACS1Q6VY07 963 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 PODNQ7Z5L7 613 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 MCF2L2Q86YR7 1114 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 GIPC3Q8TF64 312 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 ATP6V1E2Q96A05 226 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 SLC4A5Q9BY07 1137 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 TCF7L2Q9NQB0 619 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 ASNSD1Q9NWL6 643 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 PLK2Q9NYY3 685 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 EPS15L1Q9UBC2 864 aa16.29■□□□□ 0.2
CKAP4-201ENST00000378026 TMX2-CTNND1H3BSU7 103 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 POLRMTO00411 1230 aaKnown RBP16.28■□□□□ 0.2
CKAP4-201ENST00000378026 GTF2A2P52657 109 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 KRT80Q6KB66 452 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 ADCY4Q8NFM4 1077 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 RXFP2Q8WXD0 754 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 CEP41Q9BYV8 373 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 MAGEB5Q9BZ81 275 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 RNF11Q9Y3C5 154 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 ARHGEF37A1IGU5 675 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 C7orf72A4D263 438 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 APOL1O14791 398 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 CSDE1O75534 798 aaKnown RBP16.28■□□□□ 0.2
CKAP4-201ENST00000378026 STBD1O95210 358 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 LDHAP00338 332 aaKnown RBP16.28■□□□□ 0.2
CKAP4-201ENST00000378026 PRKCGP05129 697 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 PRAMEP78395 509 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 CA9Q16790 459 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 OR6B2Q6IFH4 312 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 ANKRD23Q86SG2 305 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 PATL1Q86TB9 770 aaKnown RBP16.28■□□□□ 0.2
CKAP4-201ENST00000378026 PLD6Q8N2A8 252 aaKnown RBP16.28■□□□□ 0.2
CKAP4-201ENST00000378026 CNKSR2Q8WXI2 1034 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 TXNDC16Q9P2K2 825 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 CLEC11AQ9Y240 323 aa16.28■□□□□ 0.2
CKAP4-201ENST00000378026 ERVK-10P10266 1014 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 ACAT1P24752 427 aaKnown RBP16.27■□□□□ 0.2
CKAP4-201ENST00000378026 GRK2P25098 689 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 DPP6P42658 865 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 NDST2P52849 883 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 ZNF423Q2M1K9 1284 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 IL23RQ5VWK5 629 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 SLFN12LQ6IEE8 588 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 ERI1Q8IV48 349 aaKnown RBP16.27■□□□□ 0.2
CKAP4-201ENST00000378026 TDRD5Q8NAT2 981 aaKnown RBP16.27■□□□□ 0.2
CKAP4-201ENST00000378026 SMYD1Q8NB12 490 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 IRGQQ8WZA9 623 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 ZNF341Q9BYN7 854 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 CDH19Q9H159 772 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 COQ10BQ9H8M1 238 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 HMGXB4Q9UGU5 601 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 DCDC2Q9UHG0 476 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 CTDP1Q9Y5B0 961 aaPredicted RBP16.27■□□□□ 0.2
CKAP4-201ENST00000378026 M0QYV0 167 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 CHRNGP07510 517 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 MYL4P12829 197 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 ART3Q13508 389 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 EPGNQ6UW88 154 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 CATSPER1Q8NEC5 780 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 PDCD6IPQ8WUM4 868 aaKnown RBP16.27■□□□□ 0.2
CKAP4-201ENST00000378026 APBB2Q92870 758 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 TMEM79Q9BSE2 394 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 PDLIM7Q9NR12 457 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 PCDHGC3Q9UN70 934 aa16.27■□□□□ 0.2
CKAP4-201ENST00000378026 FAM189A1O60320 539 aa16.27■□□□□ 0.19
CKAP4-201ENST00000378026 MLH1P40692 756 aa16.27■□□□□ 0.19
CKAP4-201ENST00000378026 PGGT1BP53609 377 aa16.27■□□□□ 0.19
CKAP4-201ENST00000378026 FAM47CQ5HY64 1035 aa16.27■□□□□ 0.19
CKAP4-201ENST00000378026 TRNP1Q6NT89 227 aa16.27■□□□□ 0.19
CKAP4-201ENST00000378026 C16orf89Q6UX73 402 aa16.27■□□□□ 0.19
CKAP4-201ENST00000378026 CLVS1Q8IUQ0 354 aaPredicted RBP16.27■□□□□ 0.19
CKAP4-201ENST00000378026 PCDH19Q8TAB3 1148 aa16.27■□□□□ 0.19
CKAP4-201ENST00000378026 NPAS2Q99743 824 aa16.27■□□□□ 0.19
CKAP4-201ENST00000378026 NUF2Q9BZD4 464 aa16.27■□□□□ 0.19
CKAP4-201ENST00000378026 DHX35Q9H5Z1 703 aaKnown RBP16.27■□□□□ 0.19
CKAP4-201ENST00000378026 PXMP2Q9NR77 195 aa16.27■□□□□ 0.19
CKAP4-201ENST00000378026 ADA2Q9NZK5 511 aa16.27■□□□□ 0.19
CKAP4-201ENST00000378026 EBF1Q9UH73 591 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms