RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 RNF38Q9H0F5 515 aa12.87□□□□□ -0.35
VRK3-202ENST00000377011 HOMER3Q9NSC5 361 aa12.87□□□□□ -0.35
VRK3-202ENST00000377011 FBXL21Q9UKT6 434 aa12.87□□□□□ -0.35
VRK3-202ENST00000377011 MYO16Q9Y6X6 1858 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 RGS16O15492 202 aaPredicted RBP12.86□□□□□ -0.35
VRK3-202ENST00000377011 MMEP08473 750 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 MARCKSL1P49006 195 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 SLC5A3P53794 718 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 CALCOCO2Q13137 446 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 CUL2Q13617 745 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 MAPRE1Q15691 268 aaKnown RBP12.86□□□□□ -0.35
VRK3-202ENST00000377011 NAIF1Q69YI7 327 aaPredicted RBP12.86□□□□□ -0.35
VRK3-202ENST00000377011 TRIM68Q6AZZ1 485 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 TAOK1Q7L7X3 1001 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 SLC47A2Q86VL8 602 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 UNC93AQ86WB7 457 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 CMTM8Q8IZV2 173 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 ARL14EPQ8N8R7 260 aaPredicted RBP12.86□□□□□ -0.35
VRK3-202ENST00000377011 PRSS33Q8NF86 280 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 GRK7Q8WTQ7 553 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 NXPE3Q969Y0 559 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 RNF25Q96BH1 459 aaPredicted RBP12.86□□□□□ -0.35
VRK3-202ENST00000377011 CHFRQ96EP1 664 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 SEC16BQ96JE7 1060 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 TTLL2Q9BWV7 592 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 NT5C1AQ9BXI3 368 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 CYP3A43Q9HB55 503 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 TRPC7Q9HCX4 862 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 ARHGEF3Q9NR81 526 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 WNT16Q9UBV4 365 aa12.86□□□□□ -0.35
VRK3-202ENST00000377011 CHORDC1Q9UHD1 332 aaPredicted RBP12.86□□□□□ -0.35
VRK3-202ENST00000377011 CACNA1IQ9P0X4 2223 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 ZNF840PA6NDX5 716 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 TMEM110-MUSTN1A8MSY1 372 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 RIPK2O43353 540 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 P4HA1P13674 534 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 DRD4P21917 467 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 ATP5DP30049 168 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 CDC25CP30307 473 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 AVPR2P30518 371 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 IFT88Q13099 833 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 ITIH4Q14624 930 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 SLC44A4Q53GD3 710 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 RNF187Q5TA31 235 aaPredicted RBP12.85□□□□□ -0.35
VRK3-202ENST00000377011 TRIM72Q6ZMU5 477 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 CEP128Q6ZU80 1094 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 MON1AQ86VX9 555 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 CCDC105Q8IYK2 499 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 TTC16Q8NEE8 873 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 TFAP2BQ92481 460 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 WBP2Q969T9 261 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 HNRNPABQ99729 332 aaKnown RBP12.85□□□□□ -0.35
VRK3-202ENST00000377011 IMPG2Q9BZV3 1241 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 TBC1D17Q9HA65 648 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 CSNK1G1Q9HCP0 422 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 ACP6Q9NPH0 428 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 OSER1Q9NX31 292 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 GTSE1Q9NYZ3 720 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 HELZP42694 1942 aaKnown RBP12.85□□□□□ -0.35
VRK3-202ENST00000377011 DCNP07585 359 aaKnown RBP12.85□□□□□ -0.35
VRK3-202ENST00000377011 RARAP10276 462 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 PSMC3P17980 439 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 ITIH2P19823 946 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 MNAT1P51948 309 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 CENPCQ03188 943 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 SLC29A2Q14542 456 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 ADAT2Q7Z6V5 191 aaKnown RBP12.85□□□□□ -0.35
VRK3-202ENST00000377011 CPLX4Q7Z7G2 160 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 TTC30AQ86WT1 665 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 MFSD6LQ8IWD5 586 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 NDRG1Q92597 394 aaKnown RBP12.85□□□□□ -0.35
VRK3-202ENST00000377011 SMARCD1Q96GM5 515 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 TNIP3Q96KP6 325 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 TRMT61BQ9BVS5 477 aaKnown RBP12.85□□□□□ -0.35
VRK3-202ENST00000377011 KDM4CQ9H3R0 1056 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 GMIPQ9P107 970 aa12.85□□□□□ -0.35
VRK3-202ENST00000377011 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.85□□□□□ -0.35
VRK3-202ENST00000377011 MYOFQ9NZM1 2061 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 ANTXRLA6NF34 631 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 GABBR2O75899 941 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 SHBGP04278 402 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 UNGP13051 313 aaPredicted RBP12.84□□□□□ -0.35
VRK3-202ENST00000377011 HOXC13P31276 330 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 FCHO2Q0JRZ9 810 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 FZD5Q13467 585 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 PTK6Q13882 451 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 FBXW10Q5XX13 1052 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 TXNDC11Q6PKC3 985 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 NUP93Q8N1F7 819 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 ANKS4BQ8N8V4 417 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 BBOF1Q8ND07 529 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 TMEM176AQ96HP8 235 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 VCPIP1Q96JH7 1222 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 HEXIM2Q96MH2 286 aaKnown RBP12.84□□□□□ -0.35
VRK3-202ENST00000377011 SERPINB12Q96P63 405 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 ZNF317Q96PQ6 595 aaPredicted RBP12.84□□□□□ -0.35
VRK3-202ENST00000377011 FOXP3Q9BZS1 431 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 NSRP1Q9H0G5 558 aaKnown RBP12.84□□□□□ -0.35
VRK3-202ENST00000377011 CCSER2Q9H7U1 834 aa12.84□□□□□ -0.35
VRK3-202ENST00000377011 BRD9Q9H8M2 597 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms