RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 PPP1R26Q5T8A7 1209 aaPredicted RBP16.83■□□□□ 0.29
SDC4-201ENST00000372733 UGT2A3Q6UWM9 527 aa16.83■□□□□ 0.29
SDC4-201ENST00000372733 METTL7BQ6UX53 244 aa16.83■□□□□ 0.29
SDC4-201ENST00000372733 C4orf22Q6V702 233 aa16.83■□□□□ 0.29
SDC4-201ENST00000372733 TNS4Q8IZW8 715 aa16.83■□□□□ 0.29
SDC4-201ENST00000372733 NME8Q8N427 588 aa16.83■□□□□ 0.29
SDC4-201ENST00000372733 AGR3Q8TD06 166 aa16.83■□□□□ 0.29
SDC4-201ENST00000372733 CDKL2Q92772 493 aa16.83■□□□□ 0.29
SDC4-201ENST00000372733 EZH1Q92800 747 aaPredicted RBP16.83■□□□□ 0.29
SDC4-201ENST00000372733 ATXN7L3BQ96GX2 97 aa16.83■□□□□ 0.29
SDC4-201ENST00000372733 DTLQ9NZJ0 730 aa16.83■□□□□ 0.29
SDC4-201ENST00000372733 HESX1Q9UBX0 185 aa16.83■□□□□ 0.29
SDC4-201ENST00000372733 SOWAHBA6NEL2 793 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 PAPSS1O43252 624 aaPredicted RBP16.83■□□□□ 0.28
SDC4-201ENST00000372733 GABBR2O75899 941 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 ERVK-10P10266 1014 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 P4HA1P13674 534 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 GRK2P25098 689 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 CHN2P52757 468 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 XIAPP98170 497 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 INCA1Q0VD86 236 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 SPATA24Q86W54 205 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 CLEC4CQ8WTT0 213 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 PGBD4Q96DM1 585 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 KCTD15Q96SI1 283 aaPredicted RBP16.83■□□□□ 0.28
SDC4-201ENST00000372733 LGMNQ99538 433 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 DCDC2Q9UHG0 476 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 MYO18AQ92614 2054 aaKnown RBP16.83■□□□□ 0.28
SDC4-201ENST00000372733 SMIM18P0DKX4 95 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 TYK2P29597 1187 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 HARS2P49590 506 aaKnown RBP16.83■□□□□ 0.28
SDC4-201ENST00000372733 SLC6A3Q01959 620 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 FOLH1Q04609 750 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 SLC9B1Q4ZJI4 515 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 ZNF781Q8N8C0 355 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 ARNTL2Q8WYA1 636 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 CPB2Q96IY4 423 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 CSPG4P5Q96PW8 444 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 NT5C1AQ9BXI3 368 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 SYBUQ9NX95 663 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 MTMR10Q9NXD2 777 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 CLIC5Q9NZA1 410 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 AP4E1Q9UPM8 1137 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 DTNAQ9Y4J8 743 aa16.83■□□□□ 0.28
SDC4-201ENST00000372733 CASQ2O14958 399 aaPredicted RBP16.82■□□□□ 0.28
SDC4-201ENST00000372733 MYL4P12829 197 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 ATICP31939 592 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 MTTPP55157 894 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 DPYSL2Q16555 572 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 NCBP2-AS2Q69YL0 99 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 SDCCAG8Q86SQ7 713 aaPredicted RBP16.82■□□□□ 0.28
SDC4-201ENST00000372733 ACOT1Q86TX2 421 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 KBTBD6Q86V97 674 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 ICA1LQ8NDH6 482 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 MAPK15Q8TD08 544 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 HTR3CQ8WXA8 447 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 NMD3Q96D46 503 aaKnown RBP16.82■□□□□ 0.28
SDC4-201ENST00000372733 VRTNQ9H8Y1 702 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 COG4Q9H9E3 785 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 A0A0A0MRY4 1105 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 GAS2O43903 313 aaKnown RBP16.82■□□□□ 0.28
SDC4-201ENST00000372733 DPEP1P16444 411 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 MLH1P40692 756 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 KLF10Q13118 480 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 TLR1Q15399 786 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 SLC10A6Q3KNW5 377 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 DCAF15Q66K64 600 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 CYS1Q717R9 158 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 TMC7Q7Z402 723 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 PYROXD2Q8N2H3 581 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 CCDC185Q8N715 623 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 SPATA13Q96N96 652 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 LPIN3Q9BQK8 851 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 ARHGAP26Q9UNA1 814 aa16.82■□□□□ 0.28
SDC4-201ENST00000372733 TRIP11Q15643 1979 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 CPA3P15088 417 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 PGAM1P18669 254 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 FDFT1P37268 417 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 ABCG1P45844 678 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 GTF2A2P52657 109 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 OLIG2Q13516 323 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 TMEM132DQ14C87 1099 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 MAP3K21Q5TCX8 1036 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 SMYD5Q6GMV2 418 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 NAPRTQ6XQN6 538 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 PLD6Q8N2A8 252 aaKnown RBP16.81■□□□□ 0.28
SDC4-201ENST00000372733 COLGALT1Q8NBJ5 622 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 OPTNQ96CV9 577 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 GPR20Q99678 358 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 FAM96AQ9H5X1 160 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 ACSS2Q9NR19 701 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 SNX15Q9NRS6 342 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 PCDHGB4Q9UN71 923 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 PCDHGB5Q9Y5G0 923 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 LOC285556D6RIA3 1793 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 NOP56O00567 594 aaKnown RBP16.81■□□□□ 0.28
SDC4-201ENST00000372733 HSPA4LO95757 839 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 GOT1P17174 413 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 ALDH1A3P47895 512 aa16.81■□□□□ 0.28
SDC4-201ENST00000372733 SNAPC2Q13487 334 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms