RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 GKN1Q9NS71 199 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 EDDM13A0A1B0GTR0 161 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 SMAPO00193 183 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 FAM189A1O60320 539 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 VCLP18206 1134 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 EIF3EP60228 445 aaKnown RBP9.46□□□□□ -0.89
UPF2-202ENST00000357604 USP39Q53GS9 565 aaKnown RBP9.46□□□□□ -0.89
UPF2-202ENST00000357604 ADGRF1Q5T601 910 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 LGSNQ5TDP6 509 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 C8orf74Q6P047 294 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 MFSD6LQ8IWD5 586 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 DNAAF3Q8N9W5 541 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 EXD1Q8NHP7 514 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 SEC24AO95486 1093 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 ADH1BP00325 375 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 IFNB1P01574 187 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 RALBP11234 206 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 CDH5P33151 784 aaPredicted RBP9.46□□□□□ -0.9
UPF2-202ENST00000357604 NDST2P52849 883 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 MLF2Q15773 248 aaPredicted RBP9.46□□□□□ -0.9
UPF2-202ENST00000357604 WDR45BQ5MNZ6 344 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 TAC4Q86UU9 113 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 RAB42Q8N4Z0 105 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 GDAP1Q8TB36 358 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 CDKL2Q92772 493 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 MYRFLQ96LU7 910 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 VAT1Q99536 393 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 GGA2Q9UJY4 613 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.46□□□□□ -0.9
UPF2-202ENST00000357604 PIAS3Q9Y6X2 628 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 COCHO43405 550 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 FTCDO95954 541 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 SEC13P55735 322 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 ARCQ7LC44 396 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 PALM2Q8IXS6 379 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 C3orf58Q8NDZ4 430 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 UBXN4Q92575 508 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 FGF13Q92913 245 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 MAGEH1Q9H213 219 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 HMGXB4Q9UGU5 601 aa9.46□□□□□ -0.9
UPF2-202ENST00000357604 E9PAM4 449 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 ATMINO43313 823 aaPredicted RBP9.45□□□□□ -0.9
UPF2-202ENST00000357604 LZTS3O60299 673 aaPredicted RBP9.45□□□□□ -0.9
UPF2-202ENST00000357604 SRPRAP08240 638 aaKnown RBP9.45□□□□□ -0.9
UPF2-202ENST00000357604 GARSP41250 739 aaKnown RBP9.45□□□□□ -0.9
UPF2-202ENST00000357604 CCR3P51677 355 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 Q7L0L9 218 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 MON1BQ7L1V2 547 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 ADGRD2Q7Z7M1 963 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 SETD3Q86TU7 594 aaPredicted RBP9.45□□□□□ -0.9
UPF2-202ENST00000357604 IFT20Q8IY31 132 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 TTC8Q8TAM2 541 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 PLEKHO2Q8TD55 490 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 NTAN1Q96AB6 310 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 SIX2Q9NPC8 291 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 SPHK2Q9NRA0 654 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 HCSTQ9UBK5 93 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 TRHDEQ9UKU6 1024 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 GPD2P43304 727 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 IFFO1Q0D2I5 559 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 POLNQ7Z5Q5 900 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 FAF2Q96CS3 445 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 DCUN1D1Q96GG9 259 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 CCSER2Q9H7U1 834 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 CCDC188H7C350 402 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 PYGLP06737 847 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 CFHP08603 1231 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 COMTP21964 271 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 CLCN6P51797 869 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 SLC12A2P55011 1212 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 YBEYP58557 167 aaPredicted RBP9.45□□□□□ -0.9
UPF2-202ENST00000357604 EIF4HQ15056 248 aaKnown RBP9.45□□□□□ -0.9
UPF2-202ENST00000357604 TCTN1Q2MV58 587 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 TFDP3Q5H9I0 405 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 SYNPOQ8N3V7 929 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 TC2NQ8N9U0 490 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 SCAMP5Q8TAC9 235 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 ADAM32Q8TC27 787 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 TFAP2BQ92481 460 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 ZNF670Q9BS34 389 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 ATP13A3Q9H7F0 1226 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 CNTN6Q9UQ52 1028 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 PABPC1P11940 636 aaKnown RBP9.45□□□□□ -0.9
UPF2-202ENST00000357604 LAMP2P13473 410 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 MMP8P22894 467 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 TNFRSF4P43489 277 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 BCL2L1Q07817 233 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 ELP6Q0PNE2 266 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 SEPT6Q14141 434 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 RFTN1Q14699 578 aaPredicted RBP9.45□□□□□ -0.9
UPF2-202ENST00000357604 MSANTD2Q6P1R3 559 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 EMC1Q8N766 993 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 KCNV2Q8TDN2 545 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 MOSPD1Q9UJG1 213 aa9.45□□□□□ -0.9
UPF2-202ENST00000357604 MCM3APO60318 1980 aa9.44□□□□□ -0.9
UPF2-202ENST00000357604 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.44□□□□□ -0.9
UPF2-202ENST00000357604 CAV1Q03135 178 aa9.44□□□□□ -0.9
UPF2-202ENST00000357604 KRT33BQ14525 404 aa9.44□□□□□ -0.9
UPF2-202ENST00000357604 PTPN20Q4JDL3 420 aa9.44□□□□□ -0.9
UPF2-202ENST00000357604 FBXL19Q6PCT2 694 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms