RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 TGS1Q96RS0 853 aaKnown RBP13.23□□□□□ -0.29
CLK3-201ENST00000345005 PIGVQ9NUD9 493 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 SPATS2LQ9NUQ6 558 aaKnown RBP13.23□□□□□ -0.29
CLK3-201ENST00000345005 FGFR1OP2Q9NVK5 253 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 COX16Q9P0S2 106 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 FBXW11Q9UKB1 542 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 STARD13Q9Y3M8 1113 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 H3BRJ5 948 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 LMNAP02545 664 aaKnown RBP13.23□□□□□ -0.29
CLK3-201ENST00000345005 ZSCAN5DPP0CG00 497 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 ETS1P14921 441 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 ADRA1BP35368 520 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 SLC5A3P53794 718 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 SMARCB1Q12824 385 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 MORF4L2Q15014 288 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 RGS9BPQ6ZS82 235 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 ANKS3Q6ZW76 656 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 BZW1Q7L1Q6 419 aaKnown RBP13.23□□□□□ -0.29
CLK3-201ENST00000345005 PRUNE1Q86TP1 453 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 UNC45BQ8IWX7 931 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 GLIS1Q8NBF1 620 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 SCAMP5Q8TAC9 235 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 AGAP11Q8TF27 550 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 EDEM1Q92611 657 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 CSPG4P5Q96PW8 444 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 TUBB6Q9BUF5 446 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 C11orf49Q9H6J7 331 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 LRRC4CQ9HCJ2 640 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 ABCC13Q9NSE7 274 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 DDIT4Q9NX09 232 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 HEY1Q9Y5J3 304 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 UPP2O95045 317 aa13.22□□□□□ -0.29
CLK3-201ENST00000345005 UNC5CO95185 931 aa13.22□□□□□ -0.29
CLK3-201ENST00000345005 RPSAP08865 295 aaKnown RBP13.22□□□□□ -0.29
CLK3-201ENST00000345005 ALDH7A1P49419 539 aaKnown RBP13.22□□□□□ -0.29
CLK3-201ENST00000345005 CXCR3P49682 368 aa13.22□□□□□ -0.29
CLK3-201ENST00000345005 ZNF135P52742 658 aaPredicted RBP13.22□□□□□ -0.29
CLK3-201ENST00000345005 SCAPQ12770 1279 aa13.22□□□□□ -0.29
CLK3-201ENST00000345005 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.22□□□□□ -0.295e-12■■□□□ 14.3
CLK3-201ENST00000345005 ZC3H18Q86VM9 953 aaKnown RBP13.22□□□□□ -0.29
CLK3-201ENST00000345005 NUP93Q8N1F7 819 aa13.22□□□□□ -0.29
CLK3-201ENST00000345005 TTPALQ9BTX7 342 aa13.22□□□□□ -0.29
CLK3-201ENST00000345005 FBXO44Q9H4M3 255 aa13.22□□□□□ -0.29
CLK3-201ENST00000345005 WDR6Q9NNW5 1121 aaKnown RBP13.22□□□□□ -0.29
CLK3-201ENST00000345005 CORO1CQ9ULV4 474 aaPredicted RBP13.22□□□□□ -0.29
CLK3-201ENST00000345005 SMG5Q9UPR3 1016 aaKnown RBP13.22□□□□□ -0.29
CLK3-201ENST00000345005 KIAA0100Q14667 2235 aaKnown RBP13.22□□□□□ -0.29
CLK3-201ENST00000345005 ABHD14A-ACY1A0A1B0GW23 586 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 BCLAF3A2AJT9 711 aaKnown RBP13.21□□□□□ -0.29
CLK3-201ENST00000345005 NT5C1B-RDH14C9J2C7 533 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 SMAPO00193 183 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 DGKIO75912 1065 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 NEBLO76041 1014 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 GOT1P17174 413 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 AMPD1P23109 780 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 YWHAGP61981 247 aaKnown RBP eCLIP13.21□□□□□ -0.29
CLK3-201ENST00000345005 RASA2Q15283 850 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 LONRF1Q17RB8 773 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 BTBD8Q5XKL5 378 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 TDRPQ86YL5 185 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 PYROXD2Q8N2H3 581 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 ZCCHC9Q8N567 271 aaKnown RBP13.21□□□□□ -0.29
CLK3-201ENST00000345005 FAM71DQ8N9W8 422 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 SPPL2BQ8TCT7 592 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 PAWRQ96IZ0 340 aaKnown RBP13.21□□□□□ -0.29
CLK3-201ENST00000345005 PITPNM3Q9BZ71 974 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 MAGEB5Q9BZ81 275 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 WDCPQ9H6R7 721 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 C10orf88Q9H8K7 445 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 AAASQ9NRG9 546 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 HCSTQ9UBK5 93 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 SHOC2Q9UQ13 582 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 USH1CQ9Y6N9 552 aa13.21□□□□□ -0.29
CLK3-201ENST00000345005 FAM47DPA6NHR8 397 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 TBC1D4O60343 1298 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 ACSL3O95573 720 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 RPL22P35268 128 aaKnown RBP13.2□□□□□ -0.3
CLK3-201ENST00000345005 CHKAP35790 457 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 HCAR3P49019 387 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 GDF10P55107 478 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 KCNJ2P63252 427 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 GPR17Q13304 367 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 RNASEH2BQ5TBB1 312 aaKnown RBP13.2□□□□□ -0.3
CLK3-201ENST00000345005 C4orf22Q6V702 233 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 CDKL3Q8IVW4 592 aaPredicted RBP13.2□□□□□ -0.3
CLK3-201ENST00000345005 PPIL6Q8IXY8 311 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 ARHGAP18Q8N392 663 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 ADAM32Q8TC27 787 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 ZNF398Q8TD17 642 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 RNF139Q8WU17 664 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 C2orf15Q8WU43 125 aaKnown RBP13.2□□□□□ -0.3
CLK3-201ENST00000345005 USP29Q9HBJ7 922 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 SCML2Q9UQR0 700 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.2□□□□□ -0.3
CLK3-201ENST00000345005 HACD1B0YJ81 288 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 EEF2KO00418 725 aaKnown RBP13.2□□□□□ -0.3
CLK3-201ENST00000345005 PRPF4O43172 522 aaKnown RBP eCLIP13.2□□□□□ -0.3
CLK3-201ENST00000345005 EFCAB14O75071 495 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 TIMP1P01033 207 aa13.2□□□□□ -0.3
CLK3-201ENST00000345005 CPB1P15086 417 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms