RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 OPHN1O60890 802 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 MYL2P10916 166 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 NCAM1P13591 858 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 BST1Q10588 318 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 CHI3L2Q15782 390 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 CST9Q5W186 159 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 TTC7BQ86TV6 843 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 PSTKQ8IV42 348 aaKnown RBP19.92■□□□□ 0.78
COL9A3-201ENST00000343916 PGBD4Q96DM1 585 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 AGAP3Q96P47 875 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 EBF2Q9HAK2 575 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 PSAT1Q9Y617 370 aa19.92■□□□□ 0.78
COL9A3-201ENST00000343916 SDR42E2A6NKP2 422 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 I3L4J1 428 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 GNAT1P11488 350 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 HOXC8P31273 242 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 GLUD2P49448 558 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 HUNKP57058 714 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 PDK1Q15118 436 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 LRRC8BQ6P9F7 803 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 FAM35AQ86V20 835 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 MTBPQ96DY7 904 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 WDR6Q9NNW5 1121 aaKnown RBP19.91■□□□□ 0.78
COL9A3-201ENST00000343916 SYBUQ9NX95 663 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 DCLK1O15075 740 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 USP12O75317 370 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 STK10O94804 968 aaKnown RBP19.91■□□□□ 0.78
COL9A3-201ENST00000343916 ERCC2P18074 760 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 ADRA1BP35368 520 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 DAOAP59103 153 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 PAN2Q504Q3 1202 aaKnown RBP19.91■□□□□ 0.78
COL9A3-201ENST00000343916 CXCL17Q6UXB2 119 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 ZCCHC23Q6ZST2 131 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 PID1Q7Z2X4 250 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 LONP2Q86WA8 852 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 HACE1Q8IYU2 909 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 EDEM1Q92611 657 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 INPP5DQ92835 1189 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 RSRC1Q96IZ7 334 aaKnown RBP19.91■□□□□ 0.78
COL9A3-201ENST00000343916 C20orf27Q9GZN8 174 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 ARL8BQ9NVJ2 186 aa19.91■□□□□ 0.78
COL9A3-201ENST00000343916 MARCOQ9UEW3 520 aaPredicted RBP19.91■□□□□ 0.78
COL9A3-201ENST00000343916 TSC2P49815 1807 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 KIF1CO43896 1103 aaKnown RBP19.9■□□□□ 0.78
COL9A3-201ENST00000343916 TGDSO95455 350 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 THP07101 528 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 KITP10721 976 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 SCNN1GP51170 649 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 MRPS6P82932 125 aaKnown RBP19.9■□□□□ 0.78
COL9A3-201ENST00000343916 ZBTB16Q05516 673 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 PARP6Q2NL67 630 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 E2F7Q96AV8 911 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 C15orf41Q9Y2V0 281 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 SNX10Q9Y5X0 201 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 NUP205Q92621 2012 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 HAUS5O94927 633 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 CDK16Q00536 496 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 CRYMQ14894 314 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 PAFAH1B3Q15102 231 aaKnown RBP19.9■□□□□ 0.78
COL9A3-201ENST00000343916 STEAP4Q687X5 459 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 DSTYKQ6XUX3 929 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 NUDCD3Q8IVD9 361 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 NPWQ8N729 165 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 FAM13CQ8NE31 585 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 SKA1Q96BD8 255 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 DDIT4Q9NX09 232 aa19.9■□□□□ 0.78
COL9A3-201ENST00000343916 M0QZ92 97 aa19.89■□□□□ 0.77
COL9A3-201ENST00000343916 KLF11O14901 512 aa19.89■□□□□ 0.77
COL9A3-201ENST00000343916 PPP1R12AO14974 1030 aaPredicted RBP19.89■□□□□ 0.77
COL9A3-201ENST00000343916 ALDH1A2O94788 518 aa19.89■□□□□ 0.77
COL9A3-201ENST00000343916 ALDOAP04075 364 aaKnown RBP19.89■□□□□ 0.77
COL9A3-201ENST00000343916 F7P08709 466 aaPredicted RBP19.89■□□□□ 0.77
COL9A3-201ENST00000343916 MLNP12872 115 aa19.89■□□□□ 0.77
COL9A3-201ENST00000343916 NIPAL4Q0D2K0 466 aa19.89■□□□□ 0.77
COL9A3-201ENST00000343916 GNASQ5JWF2 1037 aa19.89■□□□□ 0.77
COL9A3-201ENST00000343916 TAF2Q6P1X5 1199 aa19.89■□□□□ 0.77
COL9A3-201ENST00000343916 C16orf46Q6P387 395 aa19.89■□□□□ 0.77
COL9A3-201ENST00000343916 ALYREFQ86V81 257 aaKnown RBP19.89■□□□□ 0.77
COL9A3-201ENST00000343916 ARID3BQ8IVW6 561 aaPredicted RBP19.89■□□□□ 0.77
COL9A3-201ENST00000343916 STKLD1Q8NE28 680 aa19.89■□□□□ 0.77
COL9A3-201ENST00000343916 MAGED2Q9UNF1 606 aaPredicted RBP19.89■□□□□ 0.77
COL9A3-201ENST00000343916 ARL5CA6NH57 179 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 CRHR1P34998 444 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 TPI1P60174 286 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 IFRD2Q12894 506 aaPredicted RBP19.88■□□□□ 0.77
COL9A3-201ENST00000343916 IRF5Q13568 498 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 GDF6Q6KF10 455 aaPredicted RBP19.88■□□□□ 0.77
COL9A3-201ENST00000343916 MIPEPQ99797 713 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 NMRK2Q9NPI5 230 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 SIRPGQ9P1W8 387 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 ARMCX1Q9P291 453 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 KLHL8Q9P2G9 620 aaPredicted RBP19.88■□□□□ 0.77
COL9A3-201ENST00000343916 MTO1Q9Y2Z2 717 aaKnown RBP19.88■□□□□ 0.77
COL9A3-201ENST00000343916 PGK1P00558 417 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 CHRNA1P02708 482 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 ERVK-10P10266 1014 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 GM2AP17900 193 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 PAX7P23759 505 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 CCND1P24385 295 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 GMPRP36959 345 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms