RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 MAOBP27338 520 aa20.25■□□□□ 0.83
LIME1-201ENST00000309546 RPS24P62847 133 aaKnown RBP20.25■□□□□ 0.83
LIME1-201ENST00000309546 ZNF252P-AS1Q0IIN9 211 aa20.25■□□□□ 0.83
LIME1-201ENST00000309546 PTPRNQ16849 979 aa20.25■□□□□ 0.83
LIME1-201ENST00000309546 PLEKHG6Q3KR16 790 aa20.25■□□□□ 0.83
LIME1-201ENST00000309546 WDR45BQ5MNZ6 344 aa20.25■□□□□ 0.83
LIME1-201ENST00000309546 TMEM110Q86TL2 294 aa20.25■□□□□ 0.83
LIME1-201ENST00000309546 FAM124AQ86V42 546 aa20.25■□□□□ 0.83
LIME1-201ENST00000309546 CCDC117Q8IWD4 279 aaPredicted RBP20.25■□□□□ 0.83
LIME1-201ENST00000309546 ZNF557Q8N988 423 aaPredicted RBP20.25■□□□□ 0.83
LIME1-201ENST00000309546 DEFB124Q8NES8 71 aa20.25■□□□□ 0.83
LIME1-201ENST00000309546 OR2T3Q8NH03 318 aa20.25■□□□□ 0.83
LIME1-201ENST00000309546 SLC39A13Q96H72 371 aa20.25■□□□□ 0.83
LIME1-201ENST00000309546 IRX2Q9BZI1 471 aaPredicted RBP20.25■□□□□ 0.83
LIME1-201ENST00000309546 NUP62CLQ9H1M0 184 aa20.25■□□□□ 0.83
LIME1-201ENST00000309546 CAPN10Q9HC96 672 aa20.25■□□□□ 0.83
LIME1-201ENST00000309546 XPO7Q9UIA9 1087 aaKnown RBP20.25■□□□□ 0.83
LIME1-201ENST00000309546 DNAJC12Q9UKB3 198 aa20.25■□□□□ 0.83
LIME1-201ENST00000309546 SYNJ2BP-COX16A0A087WUM0 186 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 TRUB2O95900 331 aaKnown RBP20.24■□□□□ 0.83
LIME1-201ENST00000309546 DLDP09622 509 aaKnown RBP20.24■□□□□ 0.83
LIME1-201ENST00000309546 PMLP29590 882 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 OXTRP30559 389 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 YWHAZP63104 245 aaKnown RBP20.24■□□□□ 0.83
LIME1-201ENST00000309546 CAMK2GQ13555 558 aaPredicted RBP20.24■□□□□ 0.83
LIME1-201ENST00000309546 CDH18Q13634 790 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 TAF5Q15542 800 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 ZC3H12AQ5D1E8 599 aaKnown RBP20.24■□□□□ 0.83
LIME1-201ENST00000309546 MS4A13Q5J8X5 152 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 RAP1GAP2Q684P5 730 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 BEND5Q7L4P6 421 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 KIAA0907Q7Z7F0 614 aaPredicted RBP20.24■□□□□ 0.83
LIME1-201ENST00000309546 CHSY1Q86X52 802 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 LGI2Q8N0V4 545 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 CFAP52Q8N1V2 620 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 HDDC3Q8N4P3 179 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 C1orf131Q8NDD1 294 aaKnown RBP20.24■□□□□ 0.83
LIME1-201ENST00000309546 CPXM1Q96SM3 734 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 LHX5Q9H2C1 402 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 TMEM245Q9H330 911 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 FAM204AQ9H8W3 233 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 SIX2Q9NPC8 291 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 COX16Q9P0S2 106 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 SUSD2Q9UGT4 822 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 DACH1Q9UI36 760 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 ANGPTL2Q9UKU9 493 aa20.24■□□□□ 0.83
LIME1-201ENST00000309546 PES1O00541 588 aaKnown RBP20.23■□□□□ 0.83
LIME1-201ENST00000309546 PNMA6AP0CW24 399 aaPredicted RBP20.23■□□□□ 0.83
LIME1-201ENST00000309546 GNSP15586 552 aa20.23■□□□□ 0.83
LIME1-201ENST00000309546 PITX1P78337 314 aaPredicted RBP20.23■□□□□ 0.83
LIME1-201ENST00000309546 PTK2Q05397 1052 aa20.23■□□□□ 0.83
LIME1-201ENST00000309546 DCAF6Q58WW2 860 aa20.23■□□□□ 0.83
LIME1-201ENST00000309546 OR2I1PQ8NGU4 316 aa20.23■□□□□ 0.83
LIME1-201ENST00000309546 PPP1R13BQ96KQ4 1090 aa20.23■□□□□ 0.83
LIME1-201ENST00000309546 TUBGCP2Q9BSJ2 902 aa20.23■□□□□ 0.83
LIME1-201ENST00000309546 MIR1-1HGQ9H1L0 117 aa20.23■□□□□ 0.83
LIME1-201ENST00000309546 ARHGAP33O14559 1287 aa20.22■□□□□ 0.83
LIME1-201ENST00000309546 GRAP2O75791 330 aa20.22■□□□□ 0.83
LIME1-201ENST00000309546 CSRP1P21291 193 aaKnown RBP20.22■□□□□ 0.83
LIME1-201ENST00000309546 TACR2P21452 398 aa20.22■□□□□ 0.83
LIME1-201ENST00000309546 ANP32AP39687 249 aaKnown RBP20.22■□□□□ 0.83
LIME1-201ENST00000309546 ST8SIA6P61647 398 aa20.22■□□□□ 0.83
LIME1-201ENST00000309546 VWA3BQ502W6 1294 aa20.22■□□□□ 0.83
LIME1-201ENST00000309546 DCAF12L1Q5VU92 463 aa20.22■□□□□ 0.83
LIME1-201ENST00000309546 DEFB106AQ8N104 65 aa20.22■□□□□ 0.83
LIME1-201ENST00000309546 ZCCHC9Q8N567 271 aaKnown RBP20.22■□□□□ 0.83
LIME1-201ENST00000309546 WDTC1Q8N5D0 677 aa20.22■□□□□ 0.83
LIME1-201ENST00000309546 MINDY1Q8N5J2 469 aa20.22■□□□□ 0.83
LIME1-201ENST00000309546 FIBINQ8TAL6 211 aa20.22■□□□□ 0.83
LIME1-201ENST00000309546 NOX5Q96PH1 765 aa20.22■□□□□ 0.83
LIME1-201ENST00000309546 NUP58Q9BVL2 599 aa20.22■□□□□ 0.83
LIME1-201ENST00000309546 NDST4Q9H3R1 872 aa20.22■□□□□ 0.83
LIME1-201ENST00000309546 PRSS16Q9NQE7 514 aa20.22■□□□□ 0.83
LIME1-201ENST00000309546 PCDHGC3Q9UN70 934 aa20.22■□□□□ 0.83
LIME1-201ENST00000309546 NUMA1Q14980 2115 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 H0Y626 953 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 OPHN1O60890 802 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 LUC7L3O95232 432 aaKnown RBP20.21■□□□□ 0.83
LIME1-201ENST00000309546 IGLV3-25P01717 112 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 SYPP08247 313 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 CEACAM1P13688 526 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 ERCC5P28715 1186 aaPredicted RBP20.21■□□□□ 0.83
LIME1-201ENST00000309546 KRT9P35527 623 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 CSKP41240 450 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 CDK17Q00537 523 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 RAPGEF1Q13905 1077 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 OR6B2Q6IFH4 312 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 MMS22LQ6ZRQ5 1243 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 FAM183BPQ6ZVS7 135 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 SLC47A2Q86VL8 602 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 ATP6V0D2Q8N8Y2 350 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 CADM4Q8NFZ8 388 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 SNX19Q92543 992 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 RNF34Q969K3 372 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 LMLNQ96KR4 655 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 BTN2A3PQ96KV6 586 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 MTG2Q9H4K7 406 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 SLC32A1Q9H598 525 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 SYNCQ9H7C4 482 aa20.21■□□□□ 0.83
LIME1-201ENST00000309546 PLCB1Q9NQ66 1216 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms