RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 TCRBV5S1A1TA0A578 114 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 NDUFB5O43674 189 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 H6PDO95479 791 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 OXSR1O95747 527 aaPredicted RBP13.84□□□□□ -0.19
SKA3-201ENST00000298260 GABRB3P28472 473 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 RBL1P28749 1068 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 RCVRNP35243 200 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 ALDH3B2P48448 385 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 BCAP31P51572 246 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 GTF2A2P52657 109 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 MTX3Q5HYI7 312 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 GPR107Q5VW38 600 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 SLC2A7Q6PXP3 512 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 CYP2R1Q6VVX0 501 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 NANOGNBQ7Z5D8 188 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 FAM47BQ8NA70 645 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 TMC2Q8TDI7 906 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 ACER1Q8TDN7 264 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 RSPH1Q8WYR4 309 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 KCNN1Q92952 543 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 PLEKHA8Q96JA3 519 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 COL20A1Q9P218 1284 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 THEGQ9P2T0 379 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 GMPR2Q9P2T1 348 aaKnown RBP13.84□□□□□ -0.19
SKA3-201ENST00000298260 SFMBT1Q9UHJ3 866 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 SORCS3Q9UPU3 1222 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 SNX13Q9Y5W8 968 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 DHX15O43143 795 aaKnown RBP13.84□□□□□ -0.19
SKA3-201ENST00000298260 CST3P01034 146 aaPredicted RBP13.84□□□□□ -0.19
SKA3-201ENST00000298260 UGT1A6P19224 532 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 UGT1A1P22309 533 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 UGT1A4P22310 534 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 UGT1A3P35503 534 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 UGT1A5P35504 534 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 QARSP47897 775 aaKnown RBP13.84□□□□□ -0.19
SKA3-201ENST00000298260 LIG4P49917 911 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 ITGA7Q13683 1181 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 USP41Q3LFD5 358 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 ZACNQ401N2 412 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 APOBEC3HQ6NTF7 200 aaKnown RBP13.84□□□□□ -0.19
SKA3-201ENST00000298260 CASC4Q6P4E1 433 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 C16orf87Q6PH81 154 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 SNX29P2Q8IUI4 249 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 SPNS2Q8IVW8 549 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 NLGN1Q8N2Q7 840 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 NPAS2Q99743 824 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 NUF2Q9BZD4 464 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 RBAKQ9NYW8 714 aaPredicted RBP13.84□□□□□ -0.19
SKA3-201ENST00000298260 NYAP2Q9P242 653 aa13.84□□□□□ -0.19
SKA3-201ENST00000298260 PLIN3O60664 434 aa13.83□□□□□ -0.19
SKA3-201ENST00000298260 STAM2O75886 525 aa13.83□□□□□ -0.19
SKA3-201ENST00000298260 C4BPAP04003 597 aaKnown RBP13.83□□□□□ -0.19
SKA3-201ENST00000298260 CHRNGP07510 517 aa13.83□□□□□ -0.19
SKA3-201ENST00000298260 PIK3R1P27986 724 aa13.83□□□□□ -0.19
SKA3-201ENST00000298260 RPL26P61254 145 aaKnown RBP13.83□□□□□ -0.19
SKA3-201ENST00000298260 GNA12Q03113 381 aa13.83□□□□□ -0.19
SKA3-201ENST00000298260 DMP1Q13316 513 aaPredicted RBP13.83□□□□□ -0.19
SKA3-201ENST00000298260 CDO1Q16878 200 aa13.83□□□□□ -0.19
SKA3-201ENST00000298260 LDLRAP1Q5SW96 308 aa13.83□□□□□ -0.19
SKA3-201ENST00000298260 LGSNQ5TDP6 509 aa13.83□□□□□ -0.19
SKA3-201ENST00000298260 BNC2Q6ZN30 1099 aaPredicted RBP13.83□□□□□ -0.19
SKA3-201ENST00000298260 C15orf39Q6ZRI6 1047 aa13.83□□□□□ -0.19
SKA3-201ENST00000298260 ENOSF1Q7L5Y1 443 aa13.83□□□□□ -0.19
SKA3-201ENST00000298260 PCDH20Q8N6Y1 951 aaKnown RBP13.83□□□□□ -0.19
SKA3-201ENST00000298260 ADCY4Q8NFM4 1077 aa13.83□□□□□ -0.19
SKA3-201ENST00000298260 HAPLN2Q9GZV7 340 aa13.83□□□□□ -0.19
SKA3-201ENST00000298260 CYTH4Q9UIA0 394 aa13.83□□□□□ -0.19
SKA3-201ENST00000298260 H3BNH8 94 aa13.83□□□□□ -0.2
SKA3-201ENST00000298260 CBFA2T3O75081 653 aa13.83□□□□□ -0.2
SKA3-201ENST00000298260 JUNP05412 331 aaKnown RBP13.83□□□□□ -0.2
SKA3-201ENST00000298260 PRKCHP24723 683 aa13.83□□□□□ -0.2
SKA3-201ENST00000298260 PDCD4Q53EL6 469 aaKnown RBP13.83□□□□□ -0.2
SKA3-201ENST00000298260 LRRC38Q5VT99 294 aa13.83□□□□□ -0.2
SKA3-201ENST00000298260 ARCQ7LC44 396 aa13.83□□□□□ -0.2
SKA3-201ENST00000298260 TAS1R3Q7RTX0 852 aa13.83□□□□□ -0.2
SKA3-201ENST00000298260 ZNF786Q8N393 782 aa13.83□□□□□ -0.2
SKA3-201ENST00000298260 FIBCD1Q8N539 461 aa13.83□□□□□ -0.2
SKA3-201ENST00000298260 PDCD6IPQ8WUM4 868 aaKnown RBP13.83□□□□□ -0.2
SKA3-201ENST00000298260 RMND5BQ96G75 393 aaPredicted RBP13.83□□□□□ -0.2
SKA3-201ENST00000298260 VCPIP1Q96JH7 1222 aa13.83□□□□□ -0.2
SKA3-201ENST00000298260 FBXL18Q96ME1 805 aa13.83□□□□□ -0.2
SKA3-201ENST00000298260 TRPV6Q9H1D0 765 aa13.83□□□□□ -0.2
SKA3-201ENST00000298260 TBC1D23Q9NUY8 699 aa13.83□□□□□ -0.2
SKA3-201ENST00000298260 DDX56Q9NY93 547 aaKnown RBP13.83□□□□□ -0.2
SKA3-201ENST00000298260 NRP1O14786 923 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 BIRC5O15392 142 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 GRAP2O75791 330 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 RALBP11234 206 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 MIPP30301 263 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 GABRB2P47870 512 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 C21orf59P57076 290 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 ABCE1P61221 599 aaKnown RBP13.82□□□□□ -0.2
SKA3-201ENST00000298260 RALGDSQ12967 914 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 NME3Q13232 169 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 PIGHQ14442 188 aaPredicted RBP13.82□□□□□ -0.2
SKA3-201ENST00000298260 AOC3Q16853 763 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 PTPN20Q4JDL3 420 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 PIGGQ5H8A4 983 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 TMEM26Q6ZUK4 368 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 UTS2BQ765I0 119 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms