RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TRPV1Q8NER1 839 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 EDEM1Q92611 657 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 PGBD4Q96DM1 585 aa20.65■□□□□ 0.9
VPS53-201ENST00000291074 FAM237BA0A1B0GVD1 139 aa20.64■□□□□ 0.9
VPS53-201ENST00000291074 STK10O94804 968 aaKnown RBP20.64■□□□□ 0.9
VPS53-201ENST00000291074 NCAM1P13591 858 aa20.64■□□□□ 0.9
VPS53-201ENST00000291074 ERCC2P18074 760 aa20.64■□□□□ 0.9
VPS53-201ENST00000291074 BST1Q10588 318 aa20.64■□□□□ 0.9
VPS53-201ENST00000291074 PAFAH1B3Q15102 231 aaKnown RBP20.64■□□□□ 0.9
VPS53-201ENST00000291074 ACCSLQ4AC99 568 aa20.64■□□□□ 0.9
VPS53-201ENST00000291074 WLSQ5T9L3 541 aa20.64■□□□□ 0.9
VPS53-201ENST00000291074 STEAP4Q687X5 459 aa20.64■□□□□ 0.9
VPS53-201ENST00000291074 GDF6Q6KF10 455 aaPredicted RBP20.64■□□□□ 0.9
VPS53-201ENST00000291074 TAF2Q6P1X5 1199 aa20.64■□□□□ 0.9
VPS53-201ENST00000291074 LRRC8BQ6P9F7 803 aa20.64■□□□□ 0.9
VPS53-201ENST00000291074 SDR42E2A6NKP2 422 aa20.64■□□□□ 0.89
VPS53-201ENST00000291074 USP12O75317 370 aa20.64■□□□□ 0.89
VPS53-201ENST00000291074 THP07101 528 aa20.64■□□□□ 0.89
VPS53-201ENST00000291074 EPHB2P29323 1055 aa20.64■□□□□ 0.89
VPS53-201ENST00000291074 MTBPQ96DY7 904 aa20.64■□□□□ 0.89
VPS53-201ENST00000291074 AGAP3Q96P47 875 aa20.64■□□□□ 0.89
VPS53-201ENST00000291074 APBA2Q99767 749 aa20.64■□□□□ 0.89
VPS53-201ENST00000291074 TBC1D10AQ9BXI6 508 aa20.64■□□□□ 0.89
VPS53-201ENST00000291074 TRPV2Q9Y5S1 764 aa20.64■□□□□ 0.89
VPS53-201ENST00000291074 PSAT1Q9Y617 370 aa20.64■□□□□ 0.89
VPS53-201ENST00000291074 M0QZ92 97 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 TMPRSS15P98073 1019 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 CRYMQ14894 314 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 CHI3L2Q15782 390 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 GNASQ5JWF2 1037 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 NPWQ8N729 165 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 RAB3IPQ96QF0 476 aaPredicted RBP20.63■□□□□ 0.89
VPS53-201ENST00000291074 DDIT4Q9NX09 232 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 Q9Y3F1 56 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 ARL5CA6NH57 179 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 PPP1R12AO14974 1030 aaPredicted RBP20.63■□□□□ 0.89
VPS53-201ENST00000291074 PGK1P00558 417 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 CHRNA1P02708 482 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 MYL2P10916 166 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 MLNP12872 115 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 NIPAL4Q0D2K0 466 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 C17orf99Q6UX52 265 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 PID1Q7Z2X4 250 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 TTC7BQ86TV6 843 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 RASAL3Q86YV0 1011 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 HACE1Q8IYU2 909 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 SLC38A7Q9NVC3 462 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 ARL8BQ9NVJ2 186 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 SCN10AQ9Y5Y9 1956 aa20.63■□□□□ 0.89
VPS53-201ENST00000291074 CTGFP29279 349 aa20.62■□□□□ 0.89
VPS53-201ENST00000291074 ZNF157P51786 506 aaPredicted RBP20.62■□□□□ 0.89
VPS53-201ENST00000291074 CDK16Q00536 496 aa20.62■□□□□ 0.89
VPS53-201ENST00000291074 IFRD2Q12894 506 aaPredicted RBP20.62■□□□□ 0.89
VPS53-201ENST00000291074 AGMOQ6ZNB7 445 aa20.62■□□□□ 0.89
VPS53-201ENST00000291074 ZCCHC23Q6ZST2 131 aa20.62■□□□□ 0.89
VPS53-201ENST00000291074 LONP2Q86WA8 852 aa20.62■□□□□ 0.89
VPS53-201ENST00000291074 INPP5DQ92835 1189 aa20.62■□□□□ 0.89
VPS53-201ENST00000291074 SKA1Q96BD8 255 aa20.62■□□□□ 0.89
VPS53-201ENST00000291074 TNPO2O14787 897 aaKnown RBP20.62■□□□□ 0.89
VPS53-201ENST00000291074 ALDH1A2O94788 518 aa20.62■□□□□ 0.89
VPS53-201ENST00000291074 HAUS5O94927 633 aa20.62■□□□□ 0.89
VPS53-201ENST00000291074 F7P08709 466 aaPredicted RBP20.62■□□□□ 0.89
VPS53-201ENST00000291074 SERPINB9P50453 376 aa20.62■□□□□ 0.89
VPS53-201ENST00000291074 TPI1P60174 286 aa20.62■□□□□ 0.89
VPS53-201ENST00000291074 PARP6Q2NL67 630 aa20.62■□□□□ 0.89
VPS53-201ENST00000291074 C16orf46Q6P387 395 aa20.62■□□□□ 0.89
VPS53-201ENST00000291074 MARK2Q7KZI7 788 aaKnown RBP20.62■□□□□ 0.89
VPS53-201ENST00000291074 E2F7Q96AV8 911 aa20.62■□□□□ 0.89
VPS53-201ENST00000291074 GORASP1Q9BQQ3 440 aa20.62■□□□□ 0.89
VPS53-201ENST00000291074 AGO3Q9H9G7 860 aaKnown RBP20.62■□□□□ 0.89
VPS53-201ENST00000291074 EIF2B3Q9NR50 452 aaKnown RBP20.62■□□□□ 0.89
VPS53-201ENST00000291074 MKS1Q9NXB0 559 aa20.62■□□□□ 0.89
VPS53-201ENST00000291074 KLHL8Q9P2G9 620 aaPredicted RBP20.62■□□□□ 0.89
VPS53-201ENST00000291074 MARCOQ9UEW3 520 aaPredicted RBP20.62■□□□□ 0.89
VPS53-201ENST00000291074 SF3B1O75533 1304 aaKnown RBP eCLIP20.62■□□□□ 0.891e-10■■■■■ 107
VPS53-201ENST00000291074 KLF11O14901 512 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 TGDSO95455 350 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 AKR1A1P14550 325 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 EZRP15311 586 aaKnown RBP20.61■□□□□ 0.89
VPS53-201ENST00000291074 GMPRP36959 345 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 LHX1P48742 406 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 ZBTB16Q05516 673 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 SEMA3BQ13214 749 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 TIGD5Q53EQ6 642 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 PACS1Q6VY07 963 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 BHLHA9Q7RTU4 235 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 NUDCD3Q8IVD9 361 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 STKLD1Q8NE28 680 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 C20orf27Q9GZN8 174 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 SIRPGQ9P1W8 387 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 HHLA1C9JL84 531 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 FBXO21O94952 628 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 LTFP02788 710 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 ALDOAP04075 364 aaKnown RBP20.61■□□□□ 0.89
VPS53-201ENST00000291074 PGAM1P18669 254 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 PTPN3P26045 913 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 CRHR1P34998 444 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 TEX44Q53QW1 395 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 OR52K1Q8NGK4 314 aa20.61■□□□□ 0.89
VPS53-201ENST00000291074 HASPINQ8TF76 798 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms