RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 MRPS23Q9Y3D9 190 aaKnown RBP14.01□□□□□ -0.17
LDLR-201ENST00000252444 CFAP73A6NFT4 308 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 H3BQF6 201 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 PDE2AO00408 941 aaPredicted RBP14.01□□□□□ -0.17
LDLR-201ENST00000252444 CCL23P55773 120 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 NSUN2Q08J23 767 aaKnown RBP eCLIP14.01□□□□□ -0.17
LDLR-201ENST00000252444 CCDC153Q494R4 210 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 ZCCHC9Q8N567 271 aaKnown RBP14.01□□□□□ -0.17
LDLR-201ENST00000252444 N4BP2L2Q92802 583 aaPredicted RBP14.01□□□□□ -0.17
LDLR-201ENST00000252444 IRX2Q9BZI1 471 aaPredicted RBP14.01□□□□□ -0.17
LDLR-201ENST00000252444 RBM22Q9NW64 420 aaKnown RBP eCLIP14.01□□□□□ -0.172e-7■■■■□ 25.3
LDLR-201ENST00000252444 PSD3Q9NYI0 1048 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 VANGL2Q9ULK5 521 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 MTO1Q9Y2Z2 717 aaKnown RBP14.01□□□□□ -0.17
LDLR-201ENST00000252444 ZNF185O15231 689 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 RHOBTB1O94844 696 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 KLHL2O95198 593 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 ARFIP2P53365 341 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 JAG1P78504 1218 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 TAF11Q15544 211 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 ARMC12Q5T9G4 340 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 MYO1HQ8N1T3 1032 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 MAGEC3Q8TD91 643 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 USP33Q8TEY7 942 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 CLPBQ9H078 707 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 PHF24Q9UPV7 400 aa14.01□□□□□ -0.17
LDLR-201ENST00000252444 A0A087X1B8 175 aa14□□□□□ -0.17
LDLR-201ENST00000252444 NVLO15381 856 aaKnown RBP14□□□□□ -0.17
LDLR-201ENST00000252444 GRK2P25098 689 aa14□□□□□ -0.17
LDLR-201ENST00000252444 CDK7P50613 346 aa14□□□□□ -0.17
LDLR-201ENST00000252444 BCL2L1Q07817 233 aa14□□□□□ -0.17
LDLR-201ENST00000252444 TGM3Q08188 693 aa14□□□□□ -0.17
LDLR-201ENST00000252444 RFTN1Q14699 578 aaPredicted RBP14□□□□□ -0.17
LDLR-201ENST00000252444 RALGPS1Q5JS13 557 aa14□□□□□ -0.17
LDLR-201ENST00000252444 SNX19Q92543 992 aa14□□□□□ -0.17
LDLR-201ENST00000252444 NTAN1Q96AB6 310 aa14□□□□□ -0.17
LDLR-201ENST00000252444 CMTM5Q96DZ9 223 aa14□□□□□ -0.17
LDLR-201ENST00000252444 TGS1Q96RS0 853 aaKnown RBP14□□□□□ -0.17
LDLR-201ENST00000252444 FSCN2O14926 492 aa14□□□□□ -0.17
LDLR-201ENST00000252444 ASLP04424 464 aa14□□□□□ -0.17
LDLR-201ENST00000252444 ESRRAP11474 423 aaPredicted RBP14□□□□□ -0.17
LDLR-201ENST00000252444 MLNP12872 115 aa14□□□□□ -0.17
LDLR-201ENST00000252444 RHOQP17081 205 aa14□□□□□ -0.17
LDLR-201ENST00000252444 ZNF7P17097 686 aaPredicted RBP14□□□□□ -0.17
LDLR-201ENST00000252444 PTPN2P17706 415 aa14□□□□□ -0.17
LDLR-201ENST00000252444 ANXA11P50995 505 aaKnown RBP14□□□□□ -0.17
LDLR-201ENST00000252444 CDH8P55286 799 aa14□□□□□ -0.17
LDLR-201ENST00000252444 RBBP7Q16576 425 aa14□□□□□ -0.17
LDLR-201ENST00000252444 LCA5Q86VQ0 697 aa14□□□□□ -0.17
LDLR-201ENST00000252444 ANKRD7Q92527 254 aa14□□□□□ -0.17
LDLR-201ENST00000252444 RGS18Q9NS28 235 aa14□□□□□ -0.17
LDLR-201ENST00000252444 GTSE1Q9NYZ3 720 aa14□□□□□ -0.17
LDLR-201ENST00000252444 SLC13A4Q9UKG4 626 aa14□□□□□ -0.17
LDLR-201ENST00000252444 PCDHA11Q9Y5I1 949 aa14□□□□□ -0.17
LDLR-201ENST00000252444 LZTS3O60299 673 aaPredicted RBP14□□□□□ -0.17
LDLR-201ENST00000252444 HMOX2P30519 316 aa14□□□□□ -0.17
LDLR-201ENST00000252444 TSTA3Q13630 321 aaPredicted RBP14□□□□□ -0.17
LDLR-201ENST00000252444 MON1BQ7L1V2 547 aa14□□□□□ -0.17
LDLR-201ENST00000252444 FAM228AQ86W67 206 aa14□□□□□ -0.17
LDLR-201ENST00000252444 MYLK4Q86YV6 388 aaPredicted RBP14□□□□□ -0.17
LDLR-201ENST00000252444 TIFAQ96CG3 184 aa14□□□□□ -0.17
LDLR-201ENST00000252444 BCO2Q9BYV7 579 aa14□□□□□ -0.17
LDLR-201ENST00000252444 OSGEPQ9NPF4 335 aa14□□□□□ -0.17
LDLR-201ENST00000252444 CLGNO14967 610 aa14□□□□□ -0.17
LDLR-201ENST00000252444 GRM6O15303 877 aa14□□□□□ -0.17
LDLR-201ENST00000252444 ASMTLO95671 621 aa14□□□□□ -0.17
LDLR-201ENST00000252444 ZNF865P0CJ78 1059 aaPredicted RBP14□□□□□ -0.17
LDLR-201ENST00000252444 GFAPP14136 432 aa14□□□□□ -0.17
LDLR-201ENST00000252444 PTPN7P35236 360 aa14□□□□□ -0.17
LDLR-201ENST00000252444 TRIP4Q15650 581 aaPredicted RBP14□□□□□ -0.17
LDLR-201ENST00000252444 RFX8Q6ZV50 586 aa14□□□□□ -0.17
LDLR-201ENST00000252444 C8orf48Q96LL4 319 aa14□□□□□ -0.17
LDLR-201ENST00000252444 LACRTQ9GZZ8 138 aa14□□□□□ -0.17
LDLR-201ENST00000252444 GDF3Q9NR23 364 aa14□□□□□ -0.17
LDLR-201ENST00000252444 OR12D3Q9UGF7 316 aa14□□□□□ -0.17
LDLR-201ENST00000252444 NDST2P52849 883 aa14□□□□□ -0.17
LDLR-201ENST00000252444 LONRF1Q17RB8 773 aa14□□□□□ -0.17
LDLR-201ENST00000252444 ZRANB3Q5FWF4 1079 aa14□□□□□ -0.17
LDLR-201ENST00000252444 FICDQ9BVA6 458 aa14□□□□□ -0.17
LDLR-201ENST00000252444 MOSPD1Q9UJG1 213 aa14□□□□□ -0.17
LDLR-201ENST00000252444 CHMP2BQ9UQN3 213 aa14□□□□□ -0.17
LDLR-201ENST00000252444 ACTL7BQ9Y614 415 aa14□□□□□ -0.17
LDLR-201ENST00000252444 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.99□□□□□ -0.17
LDLR-201ENST00000252444 FAM170AA1A519 330 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 CSDE1O75534 798 aaKnown RBP13.99□□□□□ -0.17
LDLR-201ENST00000252444 SLURP2P0DP57 97 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 UBE3AQ05086 875 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 STX3Q13277 289 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 SLC35G1Q2M3R5 365 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 RASGEF1CQ8N431 466 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 MRPL45Q9BRJ2 306 aaKnown RBP13.99□□□□□ -0.17
LDLR-201ENST00000252444 RAB21Q9UL25 225 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 ARIH1Q9Y4X5 557 aaPredicted RBP13.99□□□□□ -0.17
LDLR-201ENST00000252444 HDCP19113 662 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 TKTP29401 623 aaKnown RBP13.99□□□□□ -0.17
LDLR-201ENST00000252444 HCAR3P49019 387 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 RAD23BP54727 409 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 LILRA4P59901 499 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 OCRLQ01968 901 aa13.99□□□□□ -0.17
LDLR-201ENST00000252444 PGBD3Q8N328 593 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms