RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 OR52K1Q8NGK4 314 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 SH3RF2Q8TEC5 729 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 KBTBD7Q8WVZ9 684 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 XPNPEP3Q9NQH7 507 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 AP4E1Q9UPM8 1137 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 LOC285556D6RIA3 1793 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 OTOFQ9HC10 1997 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 CREB3O43889 395 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 CCNFP41002 786 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 GLRBP48167 497 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 ACTR3P61158 418 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.01□□□□□ -0.65
USP28-201ENST00000003302 FETUBQ9UGM5 382 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 TK2O00142 265 aa11□□□□□ -0.65
USP28-201ENST00000003302 FZD9O00144 591 aa11□□□□□ -0.65
USP28-201ENST00000003302 TM7SF2O76062 418 aa11□□□□□ -0.65
USP28-201ENST00000003302 AP1B1Q10567 949 aa11□□□□□ -0.65
USP28-201ENST00000003302 MXD4Q14582 209 aaPredicted RBP11□□□□□ -0.65
USP28-201ENST00000003302 SLC2A14Q8TDB8 520 aa11□□□□□ -0.65
USP28-201ENST00000003302 P2RY11Q96G91 374 aa11□□□□□ -0.65
USP28-201ENST00000003302 ZNF184Q99676 751 aaPredicted RBP11□□□□□ -0.65
USP28-201ENST00000003302 ARHGAP42A6NI28 874 aa11□□□□□ -0.65
USP28-201ENST00000003302 A6NJR5 290 aa11□□□□□ -0.65
USP28-201ENST00000003302 TGDSO95455 350 aa11□□□□□ -0.65
USP28-201ENST00000003302 RPL10P27635 214 aaKnown RBP11□□□□□ -0.65
USP28-201ENST00000003302 IDH3AP50213 366 aa11□□□□□ -0.65
USP28-201ENST00000003302 TAP1Q03518 808 aa11□□□□□ -0.65
USP28-201ENST00000003302 WASHC5Q12768 1159 aa11□□□□□ -0.65
USP28-201ENST00000003302 CERCAMQ5T4B2 595 aa11□□□□□ -0.65
USP28-201ENST00000003302 PACS1Q6VY07 963 aa11□□□□□ -0.65
USP28-201ENST00000003302 MYLK4Q86YV6 388 aaPredicted RBP11□□□□□ -0.65
USP28-201ENST00000003302 TMPRSS6Q8IU80 811 aa11□□□□□ -0.65
USP28-201ENST00000003302 OR6B3Q8NGW1 331 aa11□□□□□ -0.65
USP28-201ENST00000003302 RTP4Q96DX8 246 aa11□□□□□ -0.65
USP28-201ENST00000003302 C11orf84Q9BUA3 381 aaPredicted RBP11□□□□□ -0.65
USP28-201ENST00000003302 AS3MTQ9HBK9 375 aa11□□□□□ -0.65
USP28-201ENST00000003302 STOML1Q9UBI4 398 aa11□□□□□ -0.65
USP28-201ENST00000003302 LYNP07948 512 aa11□□□□□ -0.65
USP28-201ENST00000003302 SDC4P31431 198 aa11□□□□□ -0.65
USP28-201ENST00000003302 CXCR3P49682 368 aa11□□□□□ -0.65
USP28-201ENST00000003302 INCA1Q0VD86 236 aa11□□□□□ -0.65
USP28-201ENST00000003302 STX3Q13277 289 aa11□□□□□ -0.65
USP28-201ENST00000003302 MTHFD1LQ6UB35 978 aa11□□□□□ -0.65
USP28-201ENST00000003302 RIOX2Q8IUF8 465 aa11□□□□□ -0.65
USP28-201ENST00000003302 COLGALT1Q8NBJ5 622 aa11□□□□□ -0.65
USP28-201ENST00000003302 ARRDC4Q8NCT1 418 aa11□□□□□ -0.65
USP28-201ENST00000003302 NLRP7Q8WX94 980 aa11□□□□□ -0.65
USP28-201ENST00000003302 MTBPQ96DY7 904 aa11□□□□□ -0.65
USP28-201ENST00000003302 SUDS3Q9H7L9 328 aaPredicted RBP11□□□□□ -0.65
USP28-201ENST00000003302 TNFRSF12AQ9NP84 129 aa11□□□□□ -0.65
USP28-201ENST00000003302 PAK5Q9P286 719 aa11□□□□□ -0.65
USP28-201ENST00000003302 TIMM13Q9Y5L4 95 aaPredicted RBP11□□□□□ -0.65
USP28-201ENST00000003302 TLL2Q9Y6L7 1015 aa11□□□□□ -0.65
USP28-201ENST00000003302 MYLKQ15746 1914 aa11□□□□□ -0.65
USP28-201ENST00000003302 SPTBN5Q9NRC6 3674 aaKnown RBP11□□□□□ -0.65
USP28-201ENST00000003302 PLIN3O60664 434 aa11□□□□□ -0.65
USP28-201ENST00000003302 PGM3O95394 542 aa11□□□□□ -0.65
USP28-201ENST00000003302 VDRP11473 427 aa11□□□□□ -0.65
USP28-201ENST00000003302 SLC1A6P48664 564 aa11□□□□□ -0.65
USP28-201ENST00000003302 SLC6A3Q01959 620 aa11□□□□□ -0.65
USP28-201ENST00000003302 NME3Q13232 169 aa11□□□□□ -0.65
USP28-201ENST00000003302 KRT72Q14CN4 511 aa11□□□□□ -0.65
USP28-201ENST00000003302 GPRIN1Q7Z2K8 1008 aa11□□□□□ -0.65
USP28-201ENST00000003302 ZNF398Q8TD17 642 aa11□□□□□ -0.65
USP28-201ENST00000003302 SLC26A7Q8TE54 656 aa11□□□□□ -0.65
USP28-201ENST00000003302 KCNN1Q92952 543 aa11□□□□□ -0.65
USP28-201ENST00000003302 C7orf26Q96N11 449 aa11□□□□□ -0.65
USP28-201ENST00000003302 NT5C1AQ9BXI3 368 aa11□□□□□ -0.65
USP28-201ENST00000003302 PRDM12Q9H4Q4 367 aa11□□□□□ -0.65
USP28-201ENST00000003302 NRP1O14786 923 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 KRT37O76014 449 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 LGALS2P05162 132 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 NCF2P19878 526 aaPredicted RBP10.99□□□□□ -0.65
USP28-201ENST00000003302 AVPR1AP37288 418 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 ARHGAP1Q07960 439 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 NIPAL4Q0D2K0 466 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 SPDYAQ5MJ70 313 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 FAM160B1Q5W0V3 765 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 KDELC2Q7Z4H8 507 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 ZNF567Q8N184 647 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 SMC1BQ8NDV3 1235 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 GSDMBQ8TAX9 411 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 OSMRQ99650 979 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 SETD4Q9NVD3 440 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 C19orf81C9J6K1 198 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 AURKAO14965 403 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 ITGA2BP08514 1039 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 RXRBP28702 533 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 EPHA3P29320 983 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 DCAF15Q66K64 600 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 FAM149B1Q96BN6 582 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 KCNK16Q96T55 309 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 PNPLA8Q9NP80 782 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 PIGVQ9NUD9 493 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 KCNK4Q9NYG8 393 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 HEMK1Q9Y5R4 338 aaPredicted RBP10.99□□□□□ -0.65
USP28-201ENST00000003302 RNF103O00237 685 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 MED7O43513 233 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 SBK3P0C264 359 aa10.99□□□□□ -0.65
USP28-201ENST00000003302 NELFEP18615 380 aaKnown RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms