RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 TRIM49CP0CI26 452 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 PTPN1P18031 435 aaKnown RBP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 ALAS2P22557 587 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 HDAC4P56524 1084 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 KRR1Q13601 381 aaKnown RBP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 SPIDRQ14159 915 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 DRAP1Q14919 205 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 BOLA3Q53S33 107 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 WSCD1Q658N2 575 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 GKN2Q86XP6 184 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 CCDC185Q8N715 623 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 C12orf42Q96LP6 360 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 SERPINI1Q99574 410 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 SLAMF7Q9NQ25 335 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 INTS10Q9NVR2 710 aaKnown RBP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 ARHGEF38Q9NXL2 777 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 TNFP01375 233 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 TPH1P17752 444 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 OCA2Q04671 838 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 SEZ6Q53EL9 994 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 USP53Q70EK8 1073 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 UBALD2Q8IYN6 164 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 ST13P4Q8IZP2 240 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 KLHL23Q8NBE8 558 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 TM9SF4Q92544 642 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 JADE3Q92613 823 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 PANX3Q96QZ0 392 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 TRIT1Q9H3H1 467 aaKnown RBP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 FGFR1OP2Q9NVK5 253 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 ERVK-11Q9UQG0 969 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 ZNF521Q96K83 1311 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 ISM1B1AKI9 464 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 SMIM22K7EJ46 135 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 IGF2BP3O00425 579 aaKnown RBP eCLIP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 VPS26AO75436 327 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 TCP1P17987 556 aaKnown RBP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 MAPK10P53779 464 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 LRRC74AQ0VAA2 488 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 LLGL1Q15334 1064 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 CYP2A13Q16696 494 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 ALKBH5Q6P6C2 394 aaKnown RBP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 MON1AQ86VX9 555 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 ZNF579Q8NAF0 562 aaKnown RBP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 HDAC7Q8WUI4 952 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 FAM3CQ92520 227 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 EDEM1Q92611 657 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 TMEM176AQ96HP8 235 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 GPRC5CQ9NQ84 441 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 CD274Q9NZQ7 290 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 MBD2Q9UBB5 411 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 RBPJLQ9UBG7 517 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 SUCOQ9UBS9 1254 aaKnown RBP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 AXIN1O15169 862 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 ECEL1O95672 775 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 CDH3P22223 829 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 GTF2H1P32780 548 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 TUBP50607 506 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 ZNF135P52742 658 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 PTPN5P54829 565 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 ADIGQ0VDE8 80 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 LONRF1Q17RB8 773 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 AP1ARQ63HQ0 302 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 C11orf88Q6PI97 169 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 TFAP2DQ7Z6R9 452 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 SIX5Q8N196 739 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 FAM46DQ8NEK8 389 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 UBE2Q2Q8WVN8 375 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 PTPRN2Q92932 1015 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 MRPL48Q96GC5 212 aaKnown RBP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 AIFM3Q96NN9 605 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 C17orf62Q9BQA9 187 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 GINS4Q9BRT9 223 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 SAMSN1Q9NSI8 373 aaKnown RBP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 CHCHD3Q9NX63 227 aaKnown RBP5.15□□□□□ -1.58
SCN1A-218ENST00000640036 STMN3Q9NZ72 180 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 MAD2L2Q9UI95 211 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 PCDHA7Q9UN72 937 aa5.15□□□□□ -1.58
SCN1A-218ENST00000640036 RIF1Q5UIP0 2472 aaKnown RBP5.15□□□□□ -1.59
SCN1A-218ENST00000640036 DCXO43602 365 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 APOA1P02647 267 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 BRD2P25440 801 aaKnown RBP5.15□□□□□ -1.59
SCN1A-218ENST00000640036 PCYT1AP49585 367 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 RPS15P62841 145 aaKnown RBP5.15□□□□□ -1.59
SCN1A-218ENST00000640036 PLGLB1Q02325 96 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 AGMOQ6ZNB7 445 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 CHST9Q7L1S5 443 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 SRLQ86TD4 932 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 PARGQ86W56 976 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 ZNF677Q86XU0 584 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 KSR1Q8IVT5 923 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 CXorf38Q8TB03 319 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 SLC22A17Q8WUG5 538 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 LENG1Q96BZ8 264 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-218ENST00000640036 KLHDC7BQ96G42 594 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 TMEM237Q96Q45 408 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 LMAN1LQ9HAT1 526 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 MKL2Q9ULH7 1088 aa5.15□□□□□ -1.59
SCN1A-218ENST00000640036 ADGRA3Q8IWK6 1321 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms