RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ALG13Q9NP73 1137 aaKnown RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 PDLIM7Q9NR12 457 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 PAPOLBQ9NRJ5 636 aaKnown RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 ARL8BQ9NVJ2 186 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 NMRK1Q9NWW6 199 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 SOX13Q9UN79 622 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 HACD1B0YJ81 288 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 TK2O00142 265 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 OPHN1O60890 802 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 ENTPD5O75356 428 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 MAFO75444 373 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 SERPINA6P08185 405 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 SRGAP2CP0DJJ0 459 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 BMP1P13497 986 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 MIPP30301 263 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 MAGEA8P43361 318 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 HIRAP54198 1017 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 GPX6P59796 221 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 PDAP1Q13442 181 aaKnown RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 SMTNL2Q2TAL5 461 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 WDR72Q3MJ13 1102 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 KBTBD12Q3ZCT8 623 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 ATP13A4Q4VNC1 1196 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 STXBP5Q5T5C0 1151 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 NAIF1Q69YI7 327 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 NDUFAF2Q8N183 169 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 RNF149Q8NC42 400 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 OR5B17Q8NGF7 314 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 BRI3BPQ8WY22 251 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 EDAQ92838 391 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 SLC7A6OSQ96CW6 309 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 TMEM176AQ96HP8 235 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 ZBED3Q96IU2 234 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 NGRNQ9NPE2 291 aaKnown RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 PLLPQ9Y342 182 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 MAFBQ9Y5Q3 323 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 CDY2AQ9Y6F7 541 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 CDY1Q9Y6F8 540 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 A6NHS1 94 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 ZNF487B1APH4 448 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 SOX1O00570 391 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 ACKR2O00590 384 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 XPOTO43592 962 aaKnown RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 LRCH4O75427 683 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 TM7SF2O76062 418 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 CALCAP01258 141 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 C1QAP02745 245 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 SERPINE1P05121 402 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 APOA4P06727 396 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 APRTP07741 180 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 MCF2P10911 925 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 FGFR1P11362 822 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 TPSB2P20231 275 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 SERPINB6P35237 376 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 RFC1P35251 1148 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 HSPA13P48723 471 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 CDK7P50613 346 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 CLCN5P51795 746 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 KPNA2P52292 529 aaKnown RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 CACNA2D1P54289 1103 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 WNT7BP56706 349 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 PRKCZQ05513 592 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 GRIK3Q13003 919 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 MED21Q13503 144 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 CUL3Q13618 768 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 TPSAB1Q15661 275 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 TBC1D25Q3MII6 688 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 EFHC1Q5JVL4 640 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 FNBP1LQ5T0N5 605 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 NBPF12Q5TAG4 269 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 LLGL2Q6P1M3 1020 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 DENND1BQ6P3S1 775 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 C1orf228Q6PIY5 440 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 DPP9Q86TI2 863 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 PRUNE1Q86TP1 453 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 KIRREL3Q8IZU9 778 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 CMASQ8NFW8 434 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 RFWD2Q8NHY2 731 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 TTC8Q8TAM2 541 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 DTX3LQ8TDB6 740 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 AFG1LQ8WV93 481 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 PMM1Q92871 262 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 NXPE3Q969Y0 559 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 SKA1Q96BD8 255 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 ACSF2Q96CM8 615 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 WRNIP1Q96S55 665 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 ACO2Q99798 780 aaKnown RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 ZNF670Q9BS34 389 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 THTPAQ9BU02 230 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 NT5C1AQ9BXI3 368 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 ASB7Q9H672 318 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 NRDE2Q9H7Z3 1164 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 UBE2ZQ9H832 354 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-214ENST00000637038 CYLDQ9NQC7 956 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 PCMTD2Q9NV79 361 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 HACD3Q9P035 362 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 HEY1Q9Y5J3 304 aa4.1□□□□□ -1.75
SCN1A-214ENST00000637038 POLR2AP24928 1970 aaKnown RBP4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms