RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TLR6Q9Y2C9 796 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 CFAP69A5D8W1 941 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 H3BQF6 201 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 TEX28O15482 410 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 CTSAP10619 480 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 TBX4P57082 545 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 SLC45A4Q5BKX6 768 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 C10orf120Q5SQS8 335 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 FAM182AQ5T1J6 154 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 KRT222Q8N1A0 295 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 UBLCP1Q8WVY7 318 aaPredicted RBP17.42■□□□□ 0.38
CLN3-252ENST00000636907 RTP4Q96DX8 246 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 FCRL2Q96LA5 508 aaPredicted RBP17.42■□□□□ 0.38
CLN3-252ENST00000636907 CCSER2Q9H7U1 834 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 RXFP1Q9HBX9 757 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.42■□□□□ 0.38
CLN3-252ENST00000636907 FNIP2Q9P278 1114 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 STK39Q9UEW8 545 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 XPO7Q9UIA9 1087 aaKnown RBP17.42■□□□□ 0.38
CLN3-252ENST00000636907 MOCS2O96007 188 aaPredicted RBP17.41■□□□□ 0.38
CLN3-252ENST00000636907 ATP2A2P16615 1042 aaKnown RBP17.41■□□□□ 0.38
CLN3-252ENST00000636907 HMGA1P17096 107 aaKnown RBP17.41■□□□□ 0.38
CLN3-252ENST00000636907 CA8P35219 290 aa17.41■□□□□ 0.38
CLN3-252ENST00000636907 ALDH1A3P47895 512 aa17.41■□□□□ 0.38
CLN3-252ENST00000636907 PMS2P54278 862 aa17.41■□□□□ 0.38
CLN3-252ENST00000636907 RNASEH2BQ5TBB1 312 aaKnown RBP17.41■□□□□ 0.38
CLN3-252ENST00000636907 BZW1Q7L1Q6 419 aaKnown RBP17.41■□□□□ 0.38
CLN3-252ENST00000636907 CCDC25Q86WR0 208 aa17.41■□□□□ 0.38
CLN3-252ENST00000636907 PHOSPHO2Q8TCD6 241 aa17.41■□□□□ 0.38
CLN3-252ENST00000636907 PWWP2AQ96N64 755 aa17.41■□□□□ 0.38
CLN3-252ENST00000636907 TMEM51Q9NW97 253 aa17.41■□□□□ 0.38
CLN3-252ENST00000636907 MARCH2Q9P0N8 246 aa17.41■□□□□ 0.38
CLN3-252ENST00000636907 TLL1O43897 1013 aa17.4■□□□□ 0.38
CLN3-252ENST00000636907 CSH1P0DML2 217 aa17.4■□□□□ 0.38
CLN3-252ENST00000636907 CSH2P0DML3 217 aa17.4■□□□□ 0.38
CLN3-252ENST00000636907 SRGAP2BP0DMP2 458 aa17.4■□□□□ 0.38
CLN3-252ENST00000636907 EPHB2P29323 1055 aa17.4■□□□□ 0.38
CLN3-252ENST00000636907 CREMQ03060 361 aa17.4■□□□□ 0.38
CLN3-252ENST00000636907 GPS2Q13227 327 aa17.4■□□□□ 0.38
CLN3-252ENST00000636907 SLMAPQ14BN4 828 aa17.4■□□□□ 0.38
CLN3-252ENST00000636907 MORF4L2Q15014 288 aa17.4■□□□□ 0.38
CLN3-252ENST00000636907 TRIP4Q15650 581 aaPredicted RBP17.4■□□□□ 0.38
CLN3-252ENST00000636907 MIB1Q86YT6 1006 aa17.4■□□□□ 0.38
CLN3-252ENST00000636907 TCEAL8Q8IYN2 117 aa17.4■□□□□ 0.38
CLN3-252ENST00000636907 TAB3Q8N5C8 712 aaPredicted RBP17.4■□□□□ 0.38
CLN3-252ENST00000636907 TFB1MQ8WVM0 346 aaKnown RBP17.4■□□□□ 0.38
CLN3-252ENST00000636907 NEU3Q9UQ49 428 aa17.4■□□□□ 0.38
CLN3-252ENST00000636907 PLAAQ9Y263 795 aa17.4■□□□□ 0.38
CLN3-252ENST00000636907 FARP1Q9Y4F1 1045 aaPredicted RBP17.4■□□□□ 0.38
CLN3-252ENST00000636907 PLXNA4Q9HCM2 1894 aa17.4■□□□□ 0.38
CLN3-252ENST00000636907 HACD1B0YJ81 288 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 PRRG1O14668 218 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 TLR5O60602 858 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 CNPP09543 421 aaKnown RBP17.39■□□□□ 0.37
CLN3-252ENST00000636907 SLC2A3P11169 496 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 VAV1P15498 845 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 ELF1P32519 619 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 TWF1Q12792 350 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 SPDYCQ5MJ68 293 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 ARTNQ5T4W7 220 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 MANEALQ5VSG8 457 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 TP53INP2Q8IXH6 220 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 NPWQ8N729 165 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 PDZD8Q8NEN9 1154 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 OVCA2Q8WZ82 227 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 CPT1BQ92523 772 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 LGMNQ99538 433 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 EPB41L4BQ9H329 900 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 DNAJC17Q9NVM6 304 aaKnown RBP17.39■□□□□ 0.37
CLN3-252ENST00000636907 SSX2IPQ9Y2D8 614 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 HS3ST4Q9Y661 456 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 SLC12A8A0AV02 714 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 NDC80O14777 642 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 SYF2O95926 243 aaKnown RBP17.39■□□□□ 0.37
CLN3-252ENST00000636907 OAS2P29728 719 aaKnown RBP17.39■□□□□ 0.37
CLN3-252ENST00000636907 PLD1Q13393 1074 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 UBAP2Q5T6F2 1119 aaKnown RBP17.39■□□□□ 0.37
CLN3-252ENST00000636907 PIK3R6Q5UE93 754 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 SNX30Q5VWJ9 437 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 HEATR6Q6AI08 1181 aaKnown RBP17.39■□□□□ 0.37
CLN3-252ENST00000636907 RWDD4Q6NW29 188 aaKnown RBP17.39■□□□□ 0.37
CLN3-252ENST00000636907 PDZD4Q76G19 769 aaPredicted RBP17.39■□□□□ 0.37
CLN3-252ENST00000636907 PCGF5Q86SE9 256 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 C14orf80Q86SX3 495 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 ZCCHC9Q8N567 271 aaKnown RBP17.39■□□□□ 0.37
CLN3-252ENST00000636907 PRCCQ92733 491 aaPredicted RBP17.39■□□□□ 0.37
CLN3-252ENST00000636907 MYRFLQ96LU7 910 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 ZNF512Q96ME7 567 aaPredicted RBP17.39■□□□□ 0.37
CLN3-252ENST00000636907 PABPC3Q9H361 631 aaKnown RBP17.39■□□□□ 0.37
CLN3-252ENST00000636907 SEMA4AQ9H3S1 761 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 PAK5Q9P286 719 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 SHOC2Q9UQ13 582 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 INSL5Q9Y5Q6 135 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 NR2E3Q9Y5X4 410 aa17.39■□□□□ 0.37
CLN3-252ENST00000636907 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.38■□□□□ 0.37
CLN3-252ENST00000636907 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.38■□□□□ 0.37
CLN3-252ENST00000636907 ZNF840PA6NDX5 716 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 H0YGN5 161 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 CXCL14O95715 111 aa17.38■□□□□ 0.37
CLN3-252ENST00000636907 APOEP02649 317 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 123.6 ms