RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 SLC12A3P55017 1021 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 P3H2Q8IVL5 708 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 KIAA0319LQ8IZA0 1049 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 PNMA5Q96PV4 448 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 OSBPL10Q9BXB5 764 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 GAKO14976 1311 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 HMGCRP04035 888 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 STX5Q13190 355 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 RPAINQ86UA6 219 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 TBCBQ99426 244 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 SOHLH2Q9NX45 425 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 SCAMP3O14828 347 aaKnown RBP11.65□□□□□ -0.55
CLIP1-219ENST00000620786 MAN1A2O60476 641 aa11.65□□□□□ -0.55
CLIP1-219ENST00000620786 ELNP15502 786 aa11.65□□□□□ -0.55
CLIP1-219ENST00000620786 CPA2P48052 419 aa11.65□□□□□ -0.55
CLIP1-219ENST00000620786 CD151P48509 253 aa11.65□□□□□ -0.55
CLIP1-219ENST00000620786 FLT3LGP49771 235 aa11.65□□□□□ -0.55
CLIP1-219ENST00000620786 PLPP4Q5VZY2 271 aa11.65□□□□□ -0.55
CLIP1-219ENST00000620786 AP1ARQ63HQ0 302 aa11.65□□□□□ -0.55
CLIP1-219ENST00000620786 CEP68Q76N32 757 aa11.65□□□□□ -0.55
CLIP1-219ENST00000620786 TRAPPC5Q8IUR0 188 aa11.65□□□□□ -0.55
CLIP1-219ENST00000620786 SLC22A9Q8IVM8 553 aa11.65□□□□□ -0.55
CLIP1-219ENST00000620786 KIAA0895Q8NCT3 520 aa11.65□□□□□ -0.55
CLIP1-219ENST00000620786 EPS8L3Q8TE67 593 aaKnown RBP11.65□□□□□ -0.55
CLIP1-219ENST00000620786 HTR3CQ8WXA8 447 aa11.65□□□□□ -0.55
CLIP1-219ENST00000620786 EXOSC4Q9NPD3 245 aaKnown RBP11.65□□□□□ -0.55
CLIP1-219ENST00000620786 ZSCAN32Q9NX65 697 aa11.65□□□□□ -0.55
CLIP1-219ENST00000620786 TMCC3Q9ULS5 477 aa11.65□□□□□ -0.55
CLIP1-219ENST00000620786 CASZ1Q86V15 1759 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 WDR27A2RRH5 827 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 NR5A2O00482 541 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 TBC1D12O60347 775 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 TBL1XO60907 577 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 MPOP05164 745 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 HDCP19113 662 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 OVGP1Q12889 678 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 NFYCQ13952 458 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 NTRK3Q16288 839 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 INSCQ1MX18 579 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 POM121L1PQ3SYA9 428 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 DENND1CQ8IV53 801 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 PIK3R5Q8WYR1 880 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 OLFM3Q96PB7 478 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 PAFAH2Q99487 392 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 GANQ9H2C0 597 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 RGS18Q9NS28 235 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 TRHDEQ9UKU6 1024 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 HES2Q9Y543 173 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 CXCL14O95715 111 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 SLC2A4P14672 509 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 COPAP53621 1224 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 ACTN3Q08043 901 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-219ENST00000620786 TCEA2Q15560 299 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 NOL9Q5SY16 702 aaKnown RBP11.64□□□□□ -0.55
CLIP1-219ENST00000620786 RAP1GAP2Q684P5 730 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 RIN3Q8TB24 985 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 MCOLN3Q8TDD5 553 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 MYCBPQ99417 103 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-219ENST00000620786 ARMC7Q9H6L4 198 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 SEPT3Q9UH03 358 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 ST3GAL5Q9UNP4 418 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 MROH2AA6NES4 1674 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 MAP2P11137 1827 aaKnown RBP11.64□□□□□ -0.55
CLIP1-219ENST00000620786 E5RJQ4 531 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 ABCB1P08183 1280 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-219ENST00000620786 CCDC159P0C7I6 412 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 TFE3P19532 575 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-219ENST00000620786 TYMPP19971 482 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 HSD17B3P37058 310 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 MAGEA9P43362 315 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 CCNG2Q16589 344 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 ATP6AP1LQ52LC2 224 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 LENG9Q96B70 501 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 MRIQ9BWK5 157 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 HIPK3Q9H422 1215 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 CAAP1Q9H8G2 361 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 AASDHPPTQ9NRN7 309 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 TMEM131LA2VDJ0 1609 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 RARGP13631 454 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 NR2C2P49116 596 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 MARSP56192 900 aaKnown RBP11.64□□□□□ -0.55
CLIP1-219ENST00000620786 MGAT5Q09328 741 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 TERF2Q15554 542 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 PSMD5Q16401 504 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 CYP20A1Q6UW02 462 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 KCNMB4Q86W47 210 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 REPS1Q96D71 796 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 NSL1Q96IY1 281 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 KRT84Q9NSB2 600 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 IMPAD1Q9NX62 359 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 FAM153AQ9UHL3 310 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 C1QTNF3-AMACRE9PGA6 284 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 AMD1P17707 334 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 PSMA4P25789 261 aaKnown RBP11.64□□□□□ -0.55
CLIP1-219ENST00000620786 PPM1AP35813 382 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 CRYBB1P53674 252 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-219ENST00000620786 MARK2Q7KZI7 788 aaKnown RBP11.64□□□□□ -0.55
CLIP1-219ENST00000620786 CD99L2Q8TCZ2 262 aa11.64□□□□□ -0.55
CLIP1-219ENST00000620786 PIH1D1Q9NWS0 290 aaKnown RBP11.64□□□□□ -0.55
CLIP1-219ENST00000620786 MPP6Q9NZW5 540 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms