RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 CAB39LQ9H9S4 337 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 IARS2Q9NSE4 1012 aaKnown RBP12.94□□□□□ -0.34
LIG1-221ENST00000613670 KANSL3Q9P2N6 904 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 EFR3BQ9Y2G0 817 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 C10orf71Q711Q0 1435 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 A0A1B0GVG6 124 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 RNF103O00237 685 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 HNRNPRO43390 633 aaKnown RBP12.94□□□□□ -0.34
LIG1-221ENST00000613670 CSPG5O95196 566 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 IL18RAPO95256 599 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 METTL18O95568 372 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 CCNG1P51959 295 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 TMEM259Q4ZIN3 620 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 SEL1L3Q68CR1 1132 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 IFNEQ86WN2 208 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 RNF169Q8NCN4 708 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 TWNKQ96RR1 684 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 ELOVL4Q9GZR5 314 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 VPS33BQ9H267 617 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 PCDH18Q9HCL0 1135 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 CYP4F12Q9HCS2 524 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 SCN7AQ01118 1682 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 C15orf38-AP3S2A0A0A6YYH1 394 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 PHGDHO43175 533 aaKnown RBP12.94□□□□□ -0.34
LIG1-221ENST00000613670 AKAP10O43572 662 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 SLC25A11Q02978 314 aaKnown RBP12.94□□□□□ -0.34
LIG1-221ENST00000613670 CA9Q16790 459 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 ARPINQ7Z6K5 226 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 KBTBD2Q8IY47 623 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 PDZD8Q8NEN9 1154 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 CDH22Q9UJ99 828 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 CDYLQ9Y232 598 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 TEX264Q9Y6I9 313 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 PLA2G6O60733 806 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 ITGA2BP08514 1039 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 CHRM1P11229 460 aaPredicted RBP12.94□□□□□ -0.34
LIG1-221ENST00000613670 TSHRP16473 764 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 PSMB4P28070 264 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 GP5P40197 560 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 ATXN1P54253 815 aaKnown RBP12.94□□□□□ -0.34
LIG1-221ENST00000613670 NAGLUP54802 743 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 DLG1Q12959 904 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 TMEM132BQ14DG7 1078 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 CYP2R1Q6VVX0 501 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 TRIM67Q6ZTA4 783 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 LCA5Q86VQ0 697 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 EXOC8Q8IYI6 725 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 WDTC1Q8N5D0 677 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 PCDH20Q8N6Y1 951 aaKnown RBP12.94□□□□□ -0.34
LIG1-221ENST00000613670 HACL1Q9UJ83 578 aa12.94□□□□□ -0.34
LIG1-221ENST00000613670 FAM200BP0CF97 657 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 PACS1Q6VY07 963 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 TMEM192Q8IY95 271 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 BARX2Q9UMQ3 279 aaPredicted RBP12.93□□□□□ -0.34
LIG1-221ENST00000613670 SLC15A5A6NIM6 579 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 TRIM13O60858 407 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 CRHR1P34998 444 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 C15orf39Q6ZRI6 1047 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 ARCQ7LC44 396 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 KIAA0319LQ8IZA0 1049 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 BHLHE22Q8NFJ8 381 aaPredicted RBP12.93□□□□□ -0.34
LIG1-221ENST00000613670 OR52K1Q8NGK4 314 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 DIS3LQ8TF46 1054 aaKnown RBP12.93□□□□□ -0.34
LIG1-221ENST00000613670 LRRC39Q96DD0 335 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 SPATA16Q9BXB7 569 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 HAPLN2Q9GZV7 340 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 CDT1Q9H211 546 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 DHX33Q9H6R0 707 aaKnown RBP12.93□□□□□ -0.34
LIG1-221ENST00000613670 TMEM216Q9P0N5 145 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 POMPQ9Y244 141 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 FNDC3AQ9Y2H6 1198 aaKnown RBP12.93□□□□□ -0.34
LIG1-221ENST00000613670 SPATA31A6Q5VVP1 1343 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 EEF2KO00418 725 aaKnown RBP12.93□□□□□ -0.34
LIG1-221ENST00000613670 NUMBP49757 651 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 NME5P56597 212 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 SLC18A2Q05940 514 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 SFT2D3Q587I9 215 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 HABP4Q5JVS0 413 aaKnown RBP12.93□□□□□ -0.34
LIG1-221ENST00000613670 CATSPER1Q8NEC5 780 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 HAUS8Q9BT25 410 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 TMEM134Q9H6X4 195 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 COG4Q9H9E3 785 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 FETUBQ9UGM5 382 aa12.93□□□□□ -0.34
LIG1-221ENST00000613670 RUVBL2Q9Y230 463 aaKnown RBP12.93□□□□□ -0.34
LIG1-221ENST00000613670 COL22A1Q8NFW1 1626 aaPredicted RBP12.92□□□□□ -0.34
LIG1-221ENST00000613670 SMCHD1A6NHR9 2005 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 SPATA31C2B4DYI2 1134 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 M0QYT0 321 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 ACKR2O00590 384 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 GIPC1O14908 333 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 RNASEH1O60930 286 aaKnown RBP12.92□□□□□ -0.34
LIG1-221ENST00000613670 PIGNO95427 931 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 GOT1P17174 413 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 PSMC3P17980 439 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 CNTFP26441 200 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 GABRB2P47870 512 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 MPP3Q13368 585 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 PDAP1Q13442 181 aaKnown RBP12.92□□□□□ -0.34
LIG1-221ENST00000613670 PTK2BQ14289 1009 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 PDK1Q15118 436 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms