RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 PPP3CCP48454 512 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 ZNF135P52742 658 aaPredicted RBP14.75□□□□□ -0.05
USP39-220ENST00000613444 DRG2P55039 364 aaKnown RBP14.75□□□□□ -0.05
USP39-220ENST00000613444 RING1Q06587 406 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 HECTD3Q5T447 861 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 GSPT2Q8IYD1 628 aaKnown RBP14.75□□□□□ -0.05
USP39-220ENST00000613444 GLIS1Q8NBF1 620 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 MICAL1Q8TDZ2 1067 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 GRK7Q8WTQ7 553 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 HNRNPLLQ8WVV9 542 aaKnown RBP14.75□□□□□ -0.05
USP39-220ENST00000613444 CDK5RAP1Q96SZ6 601 aaKnown RBP14.75□□□□□ -0.05
USP39-220ENST00000613444 TMEM121Q9BTD3 319 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 RNF38Q9H0F5 515 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 C10orf88Q9H8K7 445 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 UXTQ9UBK9 157 aaPredicted RBP14.75□□□□□ -0.05
USP39-220ENST00000613444 FEZ2Q9UHY8 353 aaPredicted RBP14.75□□□□□ -0.05
USP39-220ENST00000613444 UTP11Q9Y3A2 253 aaKnown RBP14.75□□□□□ -0.05
USP39-220ENST00000613444 HS3ST4Q9Y661 456 aa14.75□□□□□ -0.05
USP39-220ENST00000613444 SLC12A8A0AV02 714 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 C2orf78A6NCI8 922 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 H0YGN5 161 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 NRG2O14511 850 aaPredicted RBP14.74□□□□□ -0.05
USP39-220ENST00000613444 DAPK3O43293 454 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 SLC2A3P11169 496 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 ZFXP17010 805 aaPredicted RBP14.74□□□□□ -0.05
USP39-220ENST00000613444 IVDP26440 423 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 HOXC13P31276 330 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 ATP5C1P36542 298 aaKnown RBP14.74□□□□□ -0.05
USP39-220ENST00000613444 EIF3EP60228 445 aaKnown RBP14.74□□□□□ -0.05
USP39-220ENST00000613444 NRG1Q02297 640 aaPredicted RBP14.74□□□□□ -0.05
USP39-220ENST00000613444 PTK6Q13882 451 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 TAF12Q16514 161 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 PIK3R6Q5UE93 754 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 SYDE1Q6ZW31 735 aaPredicted RBP14.74□□□□□ -0.05
USP39-220ENST00000613444 GAREM2Q75VX8 874 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 ZNF683Q8IZ20 524 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 SLC22A17Q8WUG5 538 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 C1orf74Q96LT6 269 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 CCDC114Q96M63 670 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 RAB17Q9H0T7 212 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 CERS4Q9HA82 394 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 DTLQ9NZJ0 730 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 DNMT3LQ9UJW3 386 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 ZNF148Q9UQR1 794 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 HEY1Q9Y5J3 304 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 TP73O15350 636 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 RBP3P10745 1247 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 ERCC2P18074 760 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 NR2C2P49116 596 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 MLLT6P55198 1093 aaPredicted RBP14.74□□□□□ -0.05
USP39-220ENST00000613444 TPI1P60174 286 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 PAFAH1B3Q15102 231 aaKnown RBP14.74□□□□□ -0.05
USP39-220ENST00000613444 BEND6Q5SZJ8 279 aaPredicted RBP14.74□□□□□ -0.05
USP39-220ENST00000613444 PDE12Q6L8Q7 609 aaKnown RBP14.74□□□□□ -0.05
USP39-220ENST00000613444 PRUNE1Q86TP1 453 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 HS6ST3Q8IZP7 471 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 EIF1ADQ8N9N8 165 aaKnown RBP14.74□□□□□ -0.05
USP39-220ENST00000613444 OLFM3Q96PB7 478 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 EPAS1Q99814 870 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 TRIM31Q9BZY9 425 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 SIK2Q9H0K1 926 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 NKX2-4Q9H2Z4 354 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 GRHL1Q9NZI5 618 aa14.74□□□□□ -0.05
USP39-220ENST00000613444 HBS1LQ9Y450 684 aaKnown RBP14.74□□□□□ -0.05
USP39-220ENST00000613444 PDE4DIPQ5VU43 2346 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 MCF2LO15068 1137 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 MFSD11O43934 449 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 MAP3K6O95382 1288 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 GAS8O95995 478 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 MOCS2O96007 188 aaPredicted RBP14.73□□□□□ -0.05
USP39-220ENST00000613444 LRG1P02750 347 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 EPCAMP16422 314 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 RPL21P46778 160 aaKnown RBP14.73□□□□□ -0.05
USP39-220ENST00000613444 GDF10P55107 478 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 LMNB2Q03252 620 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 RTL10Q7L3V2 364 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 C14orf80Q86SX3 495 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 TADA2BQ86TJ2 420 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 AENQ8WTP8 325 aaKnown RBP14.73□□□□□ -0.05
USP39-220ENST00000613444 NEUROG2Q9H2A3 272 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 DPH5Q9H2P9 285 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 SNX24Q9Y343 169 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 OLFM2O95897 454 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 KCNQ1P51787 676 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 KPNA1P52294 538 aaPredicted RBP14.73□□□□□ -0.05
USP39-220ENST00000613444 CUL1Q13616 776 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 PPP1R7Q15435 360 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 MS4A13Q5J8X5 152 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 B4GALNT4Q76KP1 1039 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 ZC3H18Q86VM9 953 aaKnown RBP14.73□□□□□ -0.05
USP39-220ENST00000613444 UNC45BQ8IWX7 931 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 TNS4Q8IZW8 715 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 NPWQ8N729 165 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 IFT81Q8WYA0 676 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 BTN2A3PQ96KV6 586 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 USP29Q9HBJ7 922 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 MAN1C1Q9NR34 630 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 ARGLU1Q9NWB6 273 aaPredicted RBP14.73□□□□□ -0.05
USP39-220ENST00000613444 ZNF446Q9NWS9 450 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 NFU1Q9UMS0 254 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms