RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 MDM4O15151 490 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 PSTPIP1O43586 416 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 NFATC1O95644 943 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 TRUB2O95900 331 aaKnown RBP10.46□□□□□ -0.73
UPF1-213ENST00000601981 F9P00740 461 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 APOEP02649 317 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 RHOXF2BP0C7M4 288 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 ALADP13716 330 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 GDI1P31150 447 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 SDC4P31431 198 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 PGFP49763 221 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 RWDD2BP57060 319 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 TBX4P57082 545 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 RING1Q06587 406 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 NR1H3Q13133 447 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 GRM2Q14416 872 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 TRIP4Q15650 581 aaPredicted RBP10.46□□□□□ -0.73
UPF1-213ENST00000601981 C2CD6Q53TS8 623 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 SEL1L2Q5TEA6 688 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 WDR93Q6P2C0 686 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 NIPA2Q8N8Q9 360 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 DQX1Q8TE96 717 aaKnown RBP10.46□□□□□ -0.73
UPF1-213ENST00000601981 FNIP1Q8TF40 1166 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 OSCP1Q8WVF1 389 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 RSAD2Q8WXG1 361 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 ALG3Q92685 438 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 KRT35Q92764 455 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 DNASE1L2Q92874 299 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 ATP2A3Q93084 1043 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 RNF34Q969K3 372 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 EXOC4Q96A65 974 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 DDX50Q9BQ39 737 aaKnown RBP10.46□□□□□ -0.73
UPF1-213ENST00000601981 RHOXF2Q9BQY4 288 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 TRIM7Q9C029 511 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 DUS2Q9NX74 493 aaKnown RBP10.46□□□□□ -0.73
UPF1-213ENST00000601981 SFMBT1Q9UHJ3 866 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 DUSP12Q9UNI6 340 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 NAALADL1Q9UQQ1 740 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 TLR6Q9Y2C9 796 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 MYOFQ9NZM1 2061 aa10.46□□□□□ -0.74
UPF1-213ENST00000601981 MIA3Q5JRA6 1907 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 CCDC151A5D8V7 595 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 SIGLEC16A6NMB1 481 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 IRAK2O43187 625 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 ERLIN1O75477 346 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 STC2O76061 302 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 LATS1O95835 1130 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 HMBSP08397 361 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 PDGFRAP16234 1089 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 CHKAP35790 457 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 MARCKSL1P49006 195 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 SLC11A2P49281 568 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 SULT1E1P49888 294 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 DEUP1Q05D60 604 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 PIGHQ14442 188 aaPredicted RBP10.45□□□□□ -0.74
UPF1-213ENST00000601981 TAF5Q15542 800 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 PPP2R5EQ16537 467 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 SLC25A52Q3SY17 297 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 SYPL2Q5VXT5 272 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 C8orf74Q6P047 294 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 C1orf228Q6PIY5 440 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 POTEHQ6S545 545 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 HTR3DQ70Z44 454 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 PHLDB2Q86SQ0 1253 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 TAC4Q86UU9 113 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 RHOT1Q8IXI2 618 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 CPA6Q8N4T0 437 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 PIWIL1Q96J94 861 aaKnown RBP10.45□□□□□ -0.74
UPF1-213ENST00000601981 ZFRQ96KR1 1074 aaKnown RBP10.45□□□□□ -0.74
UPF1-213ENST00000601981 NECAB3Q96P71 396 aaPredicted RBP10.45□□□□□ -0.74
UPF1-213ENST00000601981 MCEEQ96PE7 176 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 PNKPQ96T60 521 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 NCAPGQ9BPX3 1015 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 DDX23Q9BUQ8 820 aaKnown RBP10.45□□□□□ -0.74
UPF1-213ENST00000601981 EPC1Q9H2F5 836 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 SLC2A4RGQ9NR83 387 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 GKN1Q9NS71 199 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 DDIT4Q9NX09 232 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 FBXL21Q9UKT6 434 aa10.45□□□□□ -0.74
UPF1-213ENST00000601981 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.45□□□□□ -0.74
UPF1-213ENST00000601981 SYNJ2BP-COX16A0A087WUM0 186 aa10.44□□□□□ -0.74
UPF1-213ENST00000601981 GOLGA6L10A0A0M3HER8 536 aa10.44□□□□□ -0.74
UPF1-213ENST00000601981 TYW5A2RUC4 315 aaKnown RBP10.44□□□□□ -0.74
UPF1-213ENST00000601981 M0QYT0 321 aa10.44□□□□□ -0.74
UPF1-213ENST00000601981 KRIT1O00522 736 aa10.44□□□□□ -0.74
UPF1-213ENST00000601981 MSI1O43347 362 aaKnown RBP10.44□□□□□ -0.74
UPF1-213ENST00000601981 DCXO43602 365 aa10.44□□□□□ -0.74
UPF1-213ENST00000601981 ADH1CP00326 375 aa10.44□□□□□ -0.74
UPF1-213ENST00000601981 FGGP02679 453 aa10.44□□□□□ -0.74
UPF1-213ENST00000601981 FYNP06241 537 aa10.44□□□□□ -0.74
UPF1-213ENST00000601981 GPD1P21695 349 aa10.44□□□□□ -0.74
UPF1-213ENST00000601981 CORO1AP31146 461 aaKnown RBP10.44□□□□□ -0.74
UPF1-213ENST00000601981 CCR1P32246 355 aa10.44□□□□□ -0.74
UPF1-213ENST00000601981 FLT3P36888 993 aa10.44□□□□□ -0.74
UPF1-213ENST00000601981 PTPN9P43378 593 aa10.44□□□□□ -0.74
UPF1-213ENST00000601981 CLCN6P51797 869 aa10.44□□□□□ -0.74
UPF1-213ENST00000601981 RPL7AP62424 266 aaKnown RBP10.44□□□□□ -0.74
UPF1-213ENST00000601981 NME3Q13232 169 aa10.44□□□□□ -0.74
UPF1-213ENST00000601981 LONRF2Q1L5Z9 754 aa10.44□□□□□ -0.74
UPF1-213ENST00000601981 ITPRIPL2Q3MIP1 535 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms