RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 HSPH1Q92598 858 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 KRT35Q92764 455 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 OTUB2Q96DC9 234 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 WDR24Q96S15 920 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 PRMT1Q99873 361 aaKnown RBP14.86□□□□□ -0.03
UPF1-211ENST00000600868 DDX50Q9BQ39 737 aaKnown RBP14.86□□□□□ -0.03
UPF1-211ENST00000600868 TLR10Q9BXR5 811 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 PRDM6Q9NQX0 595 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 TBC1D14Q9P2M4 693 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 XPO7Q9UIA9 1087 aaKnown RBP14.86□□□□□ -0.03
UPF1-211ENST00000600868 PACSIN2Q9UNF0 486 aaPredicted RBP14.86□□□□□ -0.03
UPF1-211ENST00000600868 HS3ST4Q9Y661 456 aa14.86□□□□□ -0.03
UPF1-211ENST00000600868 C2CD4DB7Z1M9 353 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 SLC9A3R1O14745 358 aaPredicted RBP14.85□□□□□ -0.03
UPF1-211ENST00000600868 DDX3YO15523 660 aaKnown RBP14.85□□□□□ -0.03
UPF1-211ENST00000600868 ECI2O75521 394 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 L1CAMP32004 1257 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 GJC1P36383 396 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 MARCKSL1P49006 195 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 ARSEP51690 589 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 SEMA3BQ13214 749 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 PDK2Q15119 407 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 CA9Q16790 459 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 AAK1Q2M2I8 961 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 FAM133BQ5BKY9 247 aaKnown RBP14.85□□□□□ -0.03
UPF1-211ENST00000600868 NADSYN1Q6IA69 706 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 PARM1Q6UWI2 310 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 MFSD6LQ8IWD5 586 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 BBS7Q8IWZ6 715 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 ZDHHC14Q8IZN3 488 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 CPXM2Q8N436 756 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 KCTD6Q8NC69 237 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 SIK2Q9H0K1 926 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 DHX35Q9H5Z1 703 aaKnown RBP14.85□□□□□ -0.03
UPF1-211ENST00000600868 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.85□□□□□ -0.03
UPF1-211ENST00000600868 GPATCH2LQ9NWQ4 482 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 THEGQ9P2T0 379 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 OR12D3Q9UGF7 316 aa14.85□□□□□ -0.03
UPF1-211ENST00000600868 ESPNB1AK53 854 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 KIF2AO00139 706 aaPredicted RBP14.84□□□□□ -0.03
UPF1-211ENST00000600868 GFRA2O00451 464 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 ZRANB2O95218 330 aaKnown RBP eCLIP14.84□□□□□ -0.03
UPF1-211ENST00000600868 TACR2P21452 398 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 HTR7P34969 479 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 CHKAP35790 457 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 RWDD2BP57060 319 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 FCHO2Q0JRZ9 810 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 HTR4Q13639 388 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 AUHQ13825 339 aaKnown RBP14.84□□□□□ -0.03
UPF1-211ENST00000600868 ZFYVE27Q5T4F4 411 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 ARTNQ5T4W7 220 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 MANEALQ5VSG8 457 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 VITQ6UXI7 678 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 CHSY1Q86X52 802 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 VSIG1Q86XK7 387 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 MAP7D3Q8IWC1 876 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 ZNF683Q8IZ20 524 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 RCOR2Q8IZ40 523 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 PYROXD2Q8N2H3 581 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 TTC16Q8NEE8 873 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 EXD1Q8NHP7 514 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 DEPDC1BQ8WUY9 529 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 OSCP1Q8WVF1 389 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 RAPGEF5Q92565 580 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 ALG3Q92685 438 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 FGF14Q92915 247 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 NXPE3Q969Y0 559 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 C16orf45Q96MC5 204 aaPredicted RBP14.84□□□□□ -0.03
UPF1-211ENST00000600868 KCTD15Q96SI1 283 aaPredicted RBP14.84□□□□□ -0.03
UPF1-211ENST00000600868 EPAS1Q99814 870 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 MAGEB5Q9BZ81 275 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 PCDH18Q9HCL0 1135 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 THG1LQ9NWX6 298 aaKnown RBP14.84□□□□□ -0.03
UPF1-211ENST00000600868 RCOR3Q9P2K3 495 aaPredicted RBP14.84□□□□□ -0.03
UPF1-211ENST00000600868 SNX10Q9Y5X0 201 aa14.84□□□□□ -0.03
UPF1-211ENST00000600868 EYSQ5T1H1 3165 aa14.83□□□□□ -0.03
UPF1-211ENST00000600868 IGLV3-10A0A075B6K4 115 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 GOLGA6L7A0A1B0GV03 622 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 CTAGE9A4FU28 777 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 C3orf70A6NLC5 250 aaPredicted RBP14.83□□□□□ -0.04
UPF1-211ENST00000600868 ZNF487B1APH4 448 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 F5H5T6 163 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 FAM72CH0Y354 149 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 ENC1O14682 589 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 SCAMP3O14828 347 aaKnown RBP14.83□□□□□ -0.04
UPF1-211ENST00000600868 ZNF500O60304 480 aaPredicted RBP14.83□□□□□ -0.04
UPF1-211ENST00000600868 LRIG2O94898 1065 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 KRT1P04264 644 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 IL9P15248 144 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 SP100P23497 879 aaPredicted RBP14.83□□□□□ -0.04
UPF1-211ENST00000600868 KDELR1P24390 212 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 SLC6A4P31645 630 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 HCAR3P49019 387 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 CDH6P55285 790 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 DPYSL3Q14195 570 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 KRT81Q14533 505 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 C5orf22Q49AR2 442 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 ODF2Q5BJF6 829 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 FAM72AQ5TYM5 149 aa14.83□□□□□ -0.04
UPF1-211ENST00000600868 RAP1GAP2Q684P5 730 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms