RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 SEPT10Q9P0V9 454 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 EMCNQ9ULC0 261 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 CNTN6Q9UQ52 1028 aa18.88■□□□□ 0.61
UPF1-210ENST00000600689 XPO1O14980 1071 aaKnown RBP18.87■□□□□ 0.61
UPF1-210ENST00000600689 CRHR1P34998 444 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 HNRNPDQ14103 355 aaKnown RBP18.87■□□□□ 0.61
UPF1-210ENST00000600689 PDE1CQ14123 709 aaPredicted RBP18.87■□□□□ 0.61
UPF1-210ENST00000600689 NRF1Q16656 503 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 MYLK3Q32MK0 819 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 TRNP1Q6NT89 227 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 TMEM192Q8IY95 271 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 CMASQ8NFW8 434 aaPredicted RBP18.87■□□□□ 0.61
UPF1-210ENST00000600689 ZFP28Q8NHY6 868 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 GSDMBQ8TAX9 411 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 DGCR14Q96DF8 476 aaKnown RBP18.87■□□□□ 0.61
UPF1-210ENST00000600689 C12orf42Q96LP6 360 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 LENG8Q96PV6 779 aaPredicted RBP18.87■□□□□ 0.61
UPF1-210ENST00000600689 R3HDMLQ9H3Y0 253 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 AFG3L2Q9Y4W6 797 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 AP4B1Q9Y6B7 739 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 SPAG6O75602 509 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 LDHAP00338 332 aaKnown RBP18.87■□□□□ 0.61
UPF1-210ENST00000600689 GBE1Q04446 702 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 SLC9B1Q4ZJI4 515 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 NXNQ6DKJ4 435 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 UNKQ9C0B0 810 aaKnown RBP18.87■□□□□ 0.61
UPF1-210ENST00000600689 SEMA6AQ9H2E6 1030 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 PDLIM7Q9NR12 457 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 TDRKHQ9Y2W6 561 aaKnown RBP18.87■□□□□ 0.61
UPF1-210ENST00000600689 MFHAS1Q9Y4C4 1052 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 SF3B1O75533 1304 aaKnown RBP eCLIP18.87■□□□□ 0.61
UPF1-210ENST00000600689 C19orf81C9J6K1 198 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 H3BNX3 289 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 H3BSA7 217 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 ALDOAP04075 364 aaKnown RBP18.87■□□□□ 0.61
UPF1-210ENST00000600689 COX4I1P13073 169 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 FGFR3P22607 806 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 TYK2P29597 1187 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 TCF7P36402 384 aaPredicted RBP18.87■□□□□ 0.61
UPF1-210ENST00000600689 APOBEC3FQ8IUX4 373 aaKnown RBP18.87■□□□□ 0.61
UPF1-210ENST00000600689 FBXW8Q8N3Y1 598 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 ZNF781Q8N8C0 355 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 CDRT15Q96T59 188 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 GPRC5DQ9NZD1 345 aa18.87■□□□□ 0.61
UPF1-210ENST00000600689 CCNT2O60583 730 aaKnown RBP18.86■□□□□ 0.61
UPF1-210ENST00000600689 MICAL2O94851 1124 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 CRTAMO95727 393 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 HSPA4LO95757 839 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 ERVK-10P10266 1014 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 ASPAP45381 313 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 CAPSQ13938 189 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 WDR78Q5VTH9 848 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 XRRA1Q6P2D8 792 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 PQLC3Q8N755 202 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 RNF157Q96PX1 679 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 ASNSD1Q9NWL6 643 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 APOL1O14791 398 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 MAFGO15525 162 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 MLH1P40692 756 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 OAZ1P54368 228 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 Q3C1V9 767 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 XKR3Q5GH77 459 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 PQLC1Q8N2U9 271 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 MAPK15Q8TD08 544 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 OR52B2Q96RD2 323 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 SDCBP2Q9H190 292 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 C1orf21Q9H246 121 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 DHX35Q9H5Z1 703 aaKnown RBP18.86■□□□□ 0.61
UPF1-210ENST00000600689 COG4Q9H9E3 785 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 XPNPEP3Q9NQH7 507 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 DNAJB4Q9UDY4 337 aa18.86■□□□□ 0.61
UPF1-210ENST00000600689 SPATA31C2B4DYI2 1134 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 DNAJA2O60884 412 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 RALBP11234 206 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 PRKCHP24723 683 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 TFDP2Q14188 446 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 PCLAFQ15004 111 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 SNX32Q86XE0 403 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 CMTM5Q96DZ9 223 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 SIGLEC10Q96LC7 697 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 EBNA1BP2Q99848 306 aaKnown RBP18.85■□□□□ 0.61
UPF1-210ENST00000600689 ZNF302Q9NR11 478 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 TXNDC16Q9P2K2 825 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 LCTP09848 1927 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 ARID2Q68CP9 1835 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 GSRP00390 522 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 HNRNPCP07910 306 aaKnown RBP eCLIP18.85■□□□□ 0.61
UPF1-210ENST00000600689 XRCC1P18887 633 aaPredicted RBP18.85■□□□□ 0.61
UPF1-210ENST00000600689 PHKA2P46019 1235 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 RPL5P46777 297 aaKnown RBP18.85■□□□□ 0.61
UPF1-210ENST00000600689 FLOT2Q14254 428 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 DLG2Q15700 870 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 TBCCQ15814 346 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 B3GNT6Q6ZMB0 384 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 BRSK2Q8IWQ3 736 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 C12orf29Q8N999 325 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 RDM1Q8NG50 284 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 PCDH19Q8TAB3 1148 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 RAB3IL1Q8TBN0 382 aa18.85■□□□□ 0.61
UPF1-210ENST00000600689 ACTRT2Q8TDY3 377 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms