RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 MPPE1Q53F39 396 aa20.04■□□□□ 0.8
UPF1-209ENST00000600310 MS4A13Q5J8X5 152 aa20.04■□□□□ 0.8
UPF1-209ENST00000600310 PIK3R6Q5UE93 754 aa20.04■□□□□ 0.8
UPF1-209ENST00000600310 FYB2Q5VWT5 728 aa20.04■□□□□ 0.8
UPF1-209ENST00000600310 BMP8AQ7Z5Y6 402 aa20.04■□□□□ 0.8
UPF1-209ENST00000600310 ETFBKMTQ8IXQ9 262 aa20.04■□□□□ 0.8
UPF1-209ENST00000600310 TMA16Q96EY4 203 aaKnown RBP20.04■□□□□ 0.8
UPF1-209ENST00000600310 P2RY11Q96G91 374 aa20.04■□□□□ 0.8
UPF1-209ENST00000600310 HAPLN3Q96S86 360 aa20.04■□□□□ 0.8
UPF1-209ENST00000600310 PRMT1Q99873 361 aaKnown RBP20.04■□□□□ 0.8
UPF1-209ENST00000600310 TBC1D17Q9HA65 648 aa20.04■□□□□ 0.8
UPF1-209ENST00000600310 MRPS17Q9Y2R5 130 aaKnown RBP20.04■□□□□ 0.8
UPF1-209ENST00000600310 PCDHA13Q9Y5I0 950 aa20.04■□□□□ 0.8
UPF1-209ENST00000600310 TICRRQ7Z2Z1 1910 aa20.04■□□□□ 0.8
UPF1-209ENST00000600310 TECTAO75443 2155 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 NEDD8-MDP1E9PL57 170 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 CACNG3O60359 315 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 TYRP14679 529 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 TACR2P21452 398 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 CD72P21854 359 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 ADRA1BP35368 520 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 EIF2DP41214 584 aaKnown RBP20.03■□□□□ 0.8
UPF1-209ENST00000600310 ACAP1Q15027 740 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 MPP7Q5T2T1 576 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 ACBD5Q5T8D3 534 aaPredicted RBP20.03■□□□□ 0.8
UPF1-209ENST00000600310 RAP1GAP2Q684P5 730 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 RFWD3Q6PCD5 774 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 C12orf40Q86WS4 652 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 CHSY1Q86X52 802 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 ZNF564Q8TBZ8 553 aaPredicted RBP20.03■□□□□ 0.8
UPF1-209ENST00000600310 ANP32BQ92688 251 aaKnown RBP20.03■□□□□ 0.8
UPF1-209ENST00000600310 EXOC4Q96A65 974 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 NTAN1Q96AB6 310 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 NELL2Q99435 816 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 P2RY13Q9BPV8 354 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 LRFN3Q9BTN0 628 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 MFSD1Q9H3U5 465 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 LTB4R2Q9NPC1 389 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 LUC7LQ9NQ29 371 aaKnown RBP20.03■□□□□ 0.8
UPF1-209ENST00000600310 CTTNBP2NLQ9P2B4 639 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 IP6K2Q9UHH9 426 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 ANAPC7Q9UJX3 599 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 HS3ST4Q9Y661 456 aa20.03■□□□□ 0.8
UPF1-209ENST00000600310 MYO1FO00160 1098 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 TSPAN3O60637 253 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 RNF8O76064 485 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 IPO7O95373 1038 aaKnown RBP20.02■□□□□ 0.8
UPF1-209ENST00000600310 PDGFBP01127 241 aaPredicted RBP20.02■□□□□ 0.8
UPF1-209ENST00000600310 GALK1P51570 392 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 PIGHQ14442 188 aaPredicted RBP20.02■□□□□ 0.8
UPF1-209ENST00000600310 TCEAL1Q15170 157 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 ARL13BQ3SXY8 428 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 TMEM196Q5HYL7 178 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 NAIF1Q69YI7 327 aaPredicted RBP20.02■□□□□ 0.8
UPF1-209ENST00000600310 RHOT2Q8IXI1 618 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 ARFGAP1Q8N6T3 406 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 NIPA2Q8N8Q9 360 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 CCDC112Q8NEF3 446 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 DDI1Q8WTU0 396 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 RFFLQ8WZ73 363 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 CD101Q93033 1021 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 MYEOVQ96EZ4 313 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 C1orf74Q96LT6 269 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 PRICKLE1Q96MT3 831 aaPredicted RBP20.02■□□□□ 0.8
UPF1-209ENST00000600310 XPO6Q96QU8 1125 aaKnown RBP20.02■□□□□ 0.8
UPF1-209ENST00000600310 NCAPGQ9BPX3 1015 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 TMPRSS4Q9NRS4 437 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 PLK2Q9NYY3 685 aa20.02■□□□□ 0.8
UPF1-209ENST00000600310 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.01■□□□□ 0.79
UPF1-209ENST00000600310 F5H5T6 163 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 TULP3O75386 442 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 MTA2O94776 668 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 TARSP26639 723 aaKnown RBP20.01■□□□□ 0.79
UPF1-209ENST00000600310 HOXD9P28356 352 aaPredicted RBP20.01■□□□□ 0.79
UPF1-209ENST00000600310 PLA2G5P39877 138 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 SLC6A11P48066 632 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 SGSHP51688 502 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 AUHQ13825 339 aaKnown RBP20.01■□□□□ 0.79
UPF1-209ENST00000600310 PON2Q15165 354 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 TMEM31Q5JXX7 168 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 RNF43Q68DV7 783 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 CWF19L1Q69YN2 538 aaKnown RBP20.01■□□□□ 0.79
UPF1-209ENST00000600310 FBXL22Q6P050 247 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 SCYL2Q6P3W7 929 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 LRRC8AQ8IWT6 810 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 LGI2Q8N0V4 545 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 ZNF687Q8N1G0 1237 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 NAT16Q8N8M0 369 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 HJURPQ8NCD3 748 aaPredicted RBP20.01■□□□□ 0.79
UPF1-209ENST00000600310 SLC35G2Q8TBE7 412 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 BHMTQ93088 406 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 PBXIP1Q96AQ6 731 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 BTBD6Q96KE9 485 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 OSBPL6Q9BZF3 934 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 FOXQ1Q9C009 403 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 SIK2Q9H0K1 926 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 FBRSL1Q9HCM7 1045 aaKnown RBP20.01■□□□□ 0.79
UPF1-209ENST00000600310 OSGEPQ9NPF4 335 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 C11orf16Q9NQ32 467 aa20.01■□□□□ 0.79
UPF1-209ENST00000600310 FBXO10Q9UK96 956 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms