RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 CENPIQ92674 756 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 NELL1Q92832 810 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 VCPIP1Q96JH7 1222 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 IRX2Q9BZI1 471 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 ARHGEF4Q9NR80 690 aa20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 DNAJC17Q9NVM6 304 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 POLR3BQ9NW08 1133 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.24■□□□□ 0.83
SHKBP1-221ENST00000599833 DOCK4Q8N1I0 1966 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 SIGLEC16A6NMB1 481 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 PRRT4C9JH25 899 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 K7ESF4 209 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 MFAP3LO75121 409 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 PAPSS2O95340 614 aaPredicted RBP20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 GRIA2P42262 883 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 SLC11A2P49281 568 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 SULT1E1P49888 294 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 SATB1Q01826 763 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 OGDHQ02218 1023 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 NME3Q13232 169 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 TRIM14Q14142 442 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 C15orf59Q2T9L4 293 aaPredicted RBP20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 FBXO43Q4G163 708 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 MPPE1Q53F39 396 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 MS4A13Q5J8X5 152 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 PLEKHA7Q6IQ23 1121 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 KIAA0907Q7Z7F0 614 aaPredicted RBP20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 SPEM1Q8N4L4 309 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 USP33Q8TEY7 942 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 BTN2A3PQ96KV6 586 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 TMPRSS4Q9NRS4 437 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 DEC1Q9P2X7 70 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 ADAMTS1Q9UHI8 967 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 STAP1Q9ULZ2 295 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 SLC27A6Q9Y2P4 619 aa20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 ARIH1Q9Y4X5 557 aaPredicted RBP20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 BZW2Q9Y6E2 419 aaKnown RBP20.23■□□□□ 0.83
SHKBP1-221ENST00000599833 SYNJ2BP-COX16A0A087WUM0 186 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 A0A087X0T9 212 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 TMCO5BA8MYB1 307 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 MOCS2O96007 188 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 FAM228BP0C875 321 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 CCR1P32246 355 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 GBP1P32455 592 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 PTPN9P43378 593 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 ZNF75DP51815 510 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 RPL7AP62424 266 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 GEN1Q17RS7 908 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 MPP7Q5T2T1 576 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 EMC10Q5UCC4 262 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 RAP1GAP2Q684P5 730 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 TMEM215Q68D42 235 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 DRC7Q8IY82 874 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 PRRX2Q99811 253 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 SPATA6Q9NWH7 488 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 COX16Q9P0S2 106 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 STARD13Q9Y3M8 1113 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 HCN4Q9Y3Q4 1203 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 EML5Q05BV3 1969 aa20.22■□□□□ 0.83
SHKBP1-221ENST00000599833 ATMINO43313 823 aaPredicted RBP20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 RTN2O75298 545 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 FTLP02792 175 aaPredicted RBP20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 APODP05090 189 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 KRT3P12035 628 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 TACR2P21452 398 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 TNFRSF4P43489 277 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 IRAK1P51617 712 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 HDAC4P56524 1084 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 RPS24P62847 133 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 ZNF252P-AS1Q0IIN9 211 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 MAMLD1Q13495 774 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 C5orf22Q49AR2 442 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 BRMS1LQ5PSV4 323 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 GRAMD4Q6IC98 578 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 C14orf80Q86SX3 495 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 RPLP0P6Q8NHW5 317 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 TMA16Q96EY4 203 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 XPO6Q96QU8 1125 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 TRIM5Q9C035 493 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 ABHD10Q9NUJ1 306 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 HS3ST4Q9Y661 456 aa20.21■□□□□ 0.83
SHKBP1-221ENST00000599833 H0Y858 1186 aa20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 PAGE1O75459 146 aa20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 APOEP02649 317 aa20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 SP9P0CG40 484 aa20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 HNRNPLP14866 589 aaKnown RBP eCLIP20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 PDGFRAP16234 1089 aa20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 HLA-FP30511 346 aa20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 DGKGP49619 791 aa20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 ADKP55263 362 aaKnown RBP20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 DEUP1Q05D60 604 aa20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 MAPK8IP2Q13387 824 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 TDRD12Q587J7 1177 aaKnown RBP20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 DNAJC24Q6P3W2 148 aa20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 TMC6Q7Z403 805 aa20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 TC2NQ8N9U0 490 aa20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 OR8K1Q8NGG5 319 aa20.2■□□□□ 0.82
SHKBP1-221ENST00000599833 DDI1Q8WTU0 396 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms