RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 PIGZQ86VD9 579 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 CEP57L1Q8IYX8 460 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 C1orf216Q8TAB5 229 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 GOLGA5Q8TBA6 731 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 WFDC5Q8TCV5 224 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 TMC2Q8TDI7 906 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 EDEM1Q92611 657 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 TATDN2Q93075 761 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 HEXIM2Q96MH2 286 aaKnown RBP9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 DUSP16Q9BY84 665 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 BACH2Q9BYV9 841 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 ULBP1Q9BZM6 244 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 NIF3L1Q9GZT8 377 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 KCNK4Q9NYG8 393 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 MARCH2Q9P0N8 246 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 CGNQ9P2M7 1197 aaKnown RBP9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 SFMBT1Q9UHJ3 866 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 APOBEC2Q9Y235 224 aaKnown RBP9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 SLC27A6Q9Y2P4 619 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 USP3Q9Y6I4 520 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 TLN1Q9Y490 2541 aaKnown RBP9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 GOLGA6L7A0A1B0GV03 622 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 TRABD2BA6NFA1 517 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 ENO4A6NNW6 628 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 H0Y8X5 98 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 FSBPO95073 299 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 F13A1P00488 732 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 SLFN14P0C7P3 912 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 ZSCAN22P10073 491 aaPredicted RBP9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 RALAP11233 206 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 ACADMP11310 421 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 PFKFB1P16118 471 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 NR2F2P24468 414 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 HOXD9P28356 352 aaPredicted RBP9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 RAD23BP54727 409 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 YWHAGP61981 247 aaKnown RBP eCLIP9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 ENPP2Q13822 863 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 FNDC3BQ53EP0 1204 aaKnown RBP9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 RFWD3Q6PCD5 774 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 KLHDC10Q6PID8 442 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 GATAD2AQ86YP4 633 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 SLC9A9Q8IVB4 645 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 FMNL3Q8IVF7 1028 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 SMYD4Q8IYR2 804 aaPredicted RBP9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 SLC4A11Q8NBS3 891 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 BAHD1Q8TBE0 780 aaPredicted RBP9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 TAF4BQ92750 862 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 MYEOVQ96EZ4 313 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 MAGEF1Q9HAY2 307 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 TM9SF3Q9HD45 589 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 CISHQ9NSE2 258 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 ABCB8Q9NUT2 735 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 FRMD4BQ9Y2L6 1034 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 UTP20O75691 2785 aaKnown RBP9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 NF1P21359 2839 aa9.04□□□□□ -0.96
SHKBP1-220ENST00000599716 DNHD1Q96M86 4753 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 FAM47DPA6NHR8 397 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 PDXKO00764 312 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 CER1O95813 267 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 CYBBP04839 570 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 CD70P32970 193 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 CHKAP35790 457 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 TKTL1P51854 596 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 COG7P83436 770 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 ARID5AQ03989 594 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 PDE4CQ08493 712 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 HNRNPDQ14103 355 aaKnown RBP9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 PTPRNQ16849 979 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 GOLGA7BQ2TAP0 167 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 DHRS13Q6UX07 377 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 CHST9Q7L1S5 443 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 TMPRSS7Q7RTY8 843 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 GLRX5Q86SX6 157 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 METTL3Q86U44 580 aaKnown RBP9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 FAM186BQ8IYM0 893 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 CADM4Q8NFZ8 388 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 OR2T3Q8NH03 318 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 UBA3Q8TBC4 463 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 UCMAQ8WVF2 138 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 BIRC7Q96CA5 298 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 NUP58Q9BVL2 599 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 IMPG2Q9BZV3 1241 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 ZDHHC5Q9C0B5 715 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 LHX5Q9H2C1 402 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 PRORYQ9H606 182 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 CAAP1Q9H8G2 361 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 CYP3A43Q9HB55 503 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 PNPLA8Q9NP80 782 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 CLIC5Q9NZA1 410 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 SERGEFQ9UGK8 458 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 ANKRD6Q9Y2G4 727 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 SHROOM3Q8TF72 1996 aa9.03□□□□□ -0.96
SHKBP1-220ENST00000599716 MTORP42345 2549 aa9.02□□□□□ -0.96
SHKBP1-220ENST00000599716 YJEFN3A6XGL0 299 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 E7ENQ6 273 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 PLK4O00444 970 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 WNT9AO14904 365 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 IKBKBO14920 756 aa9.02□□□□□ -0.97
SHKBP1-220ENST00000599716 CALUO43852 315 aaPredicted RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms