RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 PRCCQ92733 491 aaPredicted RBP19.51■□□□□ 0.71
PNKP-213ENST00000599543 TMA16Q96EY4 203 aaKnown RBP19.51■□□□□ 0.71
PNKP-213ENST00000599543 SIPA1Q96FS4 1042 aa19.51■□□□□ 0.71
PNKP-213ENST00000599543 TOE1Q96GM8 510 aaKnown RBP19.51■□□□□ 0.71
PNKP-213ENST00000599543 ZSWIM1Q9BR11 485 aa19.51■□□□□ 0.71
PNKP-213ENST00000599543 USP36Q9P275 1121 aaKnown RBP19.51■□□□□ 0.71
PNKP-213ENST00000599543 MUC22E2RYF6 1773 aaPredicted RBP19.51■□□□□ 0.71
PNKP-213ENST00000599543 ZFHX4Q86UP3 3567 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 MEI4A8MW99 385 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 RNF225M0QZC1 329 aaPredicted RBP19.5■□□□□ 0.71
PNKP-213ENST00000599543 ARHGAP33O14559 1287 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 OPHN1O60890 802 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 FBXO21O94952 628 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 LTFP02788 710 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 SYPP08247 313 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 ACADMP11310 421 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 NCAM1P13591 858 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 GNSP15586 552 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 PRKCHP24723 683 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 HLA-FP30511 346 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 KCNH2Q12809 1159 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 KLHL40Q2TBA0 621 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 NUGGCQ68CJ6 796 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 TMEM215Q68D42 235 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 CACUL1Q86Y37 369 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 ARHGEF19Q8IW93 802 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 UNC45BQ8IWX7 931 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 MINDY1Q8N5J2 469 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 WFIKKN2Q8TEU8 576 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 HSFY1Q96LI6 401 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 ITM2CQ9NQX7 267 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 SAMSN1Q9NSI8 373 aaKnown RBP19.5■□□□□ 0.71
PNKP-213ENST00000599543 ANO10Q9NW15 660 aa19.5■□□□□ 0.71
PNKP-213ENST00000599543 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.5■□□□□ 0.71
PNKP-213ENST00000599543 FGFR1OPO95684 399 aaKnown RBP19.49■□□□□ 0.71
PNKP-213ENST00000599543 ERCC5P28715 1186 aaPredicted RBP19.49■□□□□ 0.71
PNKP-213ENST00000599543 OXTRP30559 389 aa19.49■□□□□ 0.71
PNKP-213ENST00000599543 MTIF2P46199 727 aaKnown RBP19.49■□□□□ 0.71
PNKP-213ENST00000599543 SLC11A2P49281 568 aa19.49■□□□□ 0.71
PNKP-213ENST00000599543 TPMTP51580 245 aa19.49■□□□□ 0.71
PNKP-213ENST00000599543 PLEKHG6Q3KR16 790 aa19.49■□□□□ 0.71
PNKP-213ENST00000599543 FNDC3BQ53EP0 1204 aaKnown RBP19.49■□□□□ 0.71
PNKP-213ENST00000599543 AHI1Q8N157 1196 aa19.49■□□□□ 0.71
PNKP-213ENST00000599543 EHBP1Q8NDI1 1231 aa19.49■□□□□ 0.71
PNKP-213ENST00000599543 CLEC4CQ8WTT0 213 aa19.49■□□□□ 0.71
PNKP-213ENST00000599543 GPR174Q9BXC1 333 aa19.49■□□□□ 0.71
PNKP-213ENST00000599543 ABCB8Q9NUT2 735 aa19.49■□□□□ 0.71
PNKP-213ENST00000599543 WSB2Q9NYS7 404 aaPredicted RBP19.49■□□□□ 0.71
PNKP-213ENST00000599543 GGA2Q9UJY4 613 aa19.49■□□□□ 0.71
PNKP-213ENST00000599543 PLA2G4CQ9UP65 541 aa19.49■□□□□ 0.71
PNKP-213ENST00000599543 IGF2RP11717 2491 aa19.49■□□□□ 0.71
PNKP-213ENST00000599543 CFAP47Q6ZTR5 3102 aa19.49■□□□□ 0.71
PNKP-213ENST00000599543 SPEGQ15772 3267 aa19.48■□□□□ 0.71
PNKP-213ENST00000599543 SYCE3A1L190 88 aa19.48■□□□□ 0.71
PNKP-213ENST00000599543 KCNJ18B7U540 433 aa19.48■□□□□ 0.71
PNKP-213ENST00000599543 GABBR2O75899 941 aa19.48■□□□□ 0.71
PNKP-213ENST00000599543 KRT37O76014 449 aa19.48■□□□□ 0.71
PNKP-213ENST00000599543 CALCAP01258 141 aa19.48■□□□□ 0.71
PNKP-213ENST00000599543 IGLV3-27P01718 113 aa19.48■□□□□ 0.71
PNKP-213ENST00000599543 AFPP02771 609 aaKnown RBP19.48■□□□□ 0.71
PNKP-213ENST00000599543 KRT5P13647 590 aa19.48■□□□□ 0.71
PNKP-213ENST00000599543 COPAP53621 1224 aa19.48■□□□□ 0.71
PNKP-213ENST00000599543 MARSP56192 900 aaKnown RBP19.48■□□□□ 0.71
PNKP-213ENST00000599543 TBX4P57082 545 aa19.48■□□□□ 0.71
PNKP-213ENST00000599543 SEMA3BQ13214 749 aa19.48■□□□□ 0.71
PNKP-213ENST00000599543 CHST9Q7L1S5 443 aa19.48■□□□□ 0.71
PNKP-213ENST00000599543 CADM4Q8NFZ8 388 aa19.48■□□□□ 0.71
PNKP-213ENST00000599543 MIS12Q9H081 205 aa19.48■□□□□ 0.71
PNKP-213ENST00000599543 INTS2Q9H0H0 1204 aaKnown RBP19.48■□□□□ 0.71
PNKP-213ENST00000599543 ST7Q9NRC1 585 aa19.48■□□□□ 0.71
PNKP-213ENST00000599543 NUMA1Q14980 2115 aa19.48■□□□□ 0.71
PNKP-213ENST00000599543 TYW5A2RUC4 315 aaKnown RBP19.47■□□□□ 0.71
PNKP-213ENST00000599543 UPK3BL1B0FP48 263 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 UPK3BL2E5RIL1 263 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 IRAK2O43187 625 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 TBL1XO60907 577 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 PABPC1P11940 636 aaKnown RBP19.47■□□□□ 0.71
PNKP-213ENST00000599543 HLA-EP13747 358 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 MAOBP27338 520 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 SGSHP51688 502 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 RING1Q06587 406 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 ANO6Q4KMQ2 910 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 MPP7Q5T2T1 576 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 RFWD3Q6PCD5 774 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 PIP4P1Q86T03 277 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.47■□□□□ 0.71
PNKP-213ENST00000599543 ZNF557Q8N988 423 aaPredicted RBP19.47■□□□□ 0.71
PNKP-213ENST00000599543 OR2I1PQ8NGU4 316 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 OR2T3Q8NH03 318 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 CYB5D2Q8WUJ1 264 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 SERPINB11Q96P15 392 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 IRX2Q9BZI1 471 aaPredicted RBP19.47■□□□□ 0.71
PNKP-213ENST00000599543 THAP9Q9H5L6 903 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 NFE2L3Q9Y4A8 694 aa19.47■□□□□ 0.71
PNKP-213ENST00000599543 SART1O43290 800 aaKnown RBP19.46■□□□□ 0.71
PNKP-213ENST00000599543 IGLV3-19P01714 112 aa19.46■□□□□ 0.71
PNKP-213ENST00000599543 ATP5BP06576 529 aaKnown RBP19.46■□□□□ 0.71
PNKP-213ENST00000599543 FAM133BQ5BKY9 247 aaKnown RBP19.46■□□□□ 0.71
PNKP-213ENST00000599543 PIK3R6Q5UE93 754 aa19.46■□□□□ 0.71
PNKP-213ENST00000599543 ADIPOR2Q86V24 386 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms