RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 MAPK8IP2Q13387 824 aaPredicted RBP14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 PPP2R5DQ14738 602 aa14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 MS4A13Q5J8X5 152 aa14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 RAP1GAP2Q684P5 730 aa14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 RNF43Q68DV7 783 aa14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 DNAJC24Q6P3W2 148 aa14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 CFAP52Q8N1V2 620 aa14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 WFDC5Q8TCV5 224 aa14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 CENPIQ92674 756 aaPredicted RBP14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 TMA16Q96EY4 203 aaKnown RBP14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 VCPIP1Q96JH7 1222 aa14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 MCEEQ96PE7 176 aa14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 SELENOOQ9BVL4 669 aa14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 CHRDQ9H2X0 955 aa14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 ZDHHC4Q9NPG8 344 aa14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 ARHGEF4Q9NR80 690 aa14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 DNAJC17Q9NVM6 304 aaKnown RBP14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 ARHGEF38Q9NXL2 777 aa14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 RRN3Q9NYV6 651 aa14.74□□□□□ -0.05
SHKBP1-217ENST00000598558 RNF40O75150 1001 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 PAGE1O75459 146 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 TACR2P21452 398 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 DRD1P21728 446 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 CCR1P32246 355 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 EIF2DP41214 584 aaKnown RBP14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 PTPN9P43378 593 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 SLC11A2P49281 568 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 HDAC4P56524 1084 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 AMPD2Q01433 879 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 GFPT1Q06210 699 aaPredicted RBP14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 ZNF252P-AS1Q0IIN9 211 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 TCF15Q12870 199 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 CDO1Q16878 200 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 DGKKQ5KSL6 1271 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 ALKBH5Q6P6C2 394 aaKnown RBP14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 C1orf228Q6PIY5 440 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 FAM131BQ86XD5 332 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 ARFGAP1Q8N6T3 406 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 DDI1Q8WTU0 396 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 RNF34Q969K3 372 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 IGSF8Q969P0 613 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 ARHGEF26Q96DR7 871 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 LMLNQ96KR4 655 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 BTN2A3PQ96KV6 586 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 PACSIN1Q9BY11 444 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 TKTL2Q9H0I9 626 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 DEC1Q9P2X7 70 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 CNOT8Q9UFF9 292 aaKnown RBP14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 STAP1Q9ULZ2 295 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 HS3ST4Q9Y661 456 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 ZDBF2Q9HCK1 2354 aa14.73□□□□□ -0.05
SHKBP1-217ENST00000598558 TMEM191CA6NGB0 347 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 NCAM2O15394 837 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 CCP110O43303 1012 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 GALR2O43603 387 aaPredicted RBP14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 TBL1XO60907 577 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 APOEP02649 317 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 ABCB4P21439 1286 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 GPD1P21695 349 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 GRIA2P42262 883 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 KIR2DL1P43626 348 aaPredicted RBP14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 SEC13P55735 322 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 GEN1Q17RS7 908 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 MPPE1Q53F39 396 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 CCDC122Q5T0U0 273 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 TMEM215Q68D42 235 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 FBXL22Q6P050 247 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 CIR1Q86X95 450 aaPredicted RBP14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 ZNF683Q8IZ20 524 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 LGI2Q8N0V4 545 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 ATP6V0D2Q8N8Y2 350 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 ZNF653Q96CK0 615 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 SIK2Q9H0K1 926 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 THAP2Q9H0W7 228 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 WDCPQ9H6R7 721 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 NHEJ1Q9H9Q4 299 aaPredicted RBP14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 STIM2Q9P246 746 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 MYO1AQ9UBC5 1043 aa14.72□□□□□ -0.05
SHKBP1-217ENST00000598558 SSU72P8A0A1W2PR75 194 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 F9P00740 461 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 SLC2A3P11169 496 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 COL9A1P20849 921 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 SDC4P31431 198 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 RDXP35241 583 aaKnown RBP14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 ZNF143P52747 638 aaPredicted RBP14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 GALCP54803 685 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 SATB1Q01826 763 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 AUHQ13825 339 aaKnown RBP14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 LRRC32Q14392 662 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 SLC18A3Q16572 532 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 FSCBQ5H9T9 825 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 BRMS1LQ5PSV4 323 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 GRAMD4Q6IC98 578 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 TSSK4Q6SA08 328 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 CHSY1Q86X52 802 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 C1orf210Q8IVY1 113 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 CCDC185Q8N715 623 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 TERB1Q8NA31 727 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 USP33Q8TEY7 942 aa14.71□□□□□ -0.05
SHKBP1-217ENST00000598558 FAM172AQ8WUF8 416 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms