RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PPP1R3GB7ZBB8 358 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 FLRT2O43155 660 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 DKK1O94907 266 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 ZBED1O96006 694 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 EPB41P11171 864 aaKnown RBP13.07□□□□□ -0.32
TRIM28-212ENST00000597995 HARS2P49590 506 aaKnown RBP13.07□□□□□ -0.32
TRIM28-212ENST00000597995 AFF3P51826 1226 aaKnown RBP13.07□□□□□ -0.32
TRIM28-212ENST00000597995 TKTL1P51854 596 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 RAD23BP54727 409 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 FKBP3Q00688 224 aaKnown RBP13.07□□□□□ -0.32
TRIM28-212ENST00000597995 SUZ12Q15022 739 aaKnown RBP13.07□□□□□ -0.32
TRIM28-212ENST00000597995 TMPRSS7Q7RTY8 843 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 WFIKKN2Q8TEU8 576 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 SORCS1Q8WY21 1168 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 TATDN2Q93075 761 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 ARID3AQ99856 593 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 TMEM245Q9H330 911 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 FBRSQ9HAH7 460 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 RAB20Q9NX57 234 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 DKK4Q9UBT3 224 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 STOML2Q9UJZ1 356 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 FNDC3AQ9Y2H6 1198 aaKnown RBP13.07□□□□□ -0.32
TRIM28-212ENST00000597995 HBS1LQ9Y450 684 aaKnown RBP13.07□□□□□ -0.32
TRIM28-212ENST00000597995 ADAMTS20P59510 1910 aa13.07□□□□□ -0.32
TRIM28-212ENST00000597995 NBEAQ8NFP9 2946 aa13.06□□□□□ -0.32
TRIM28-212ENST00000597995 SLC16A3O15427 465 aaKnown RBP13.06□□□□□ -0.32
TRIM28-212ENST00000597995 STX10O60499 249 aa13.06□□□□□ -0.32
TRIM28-212ENST00000597995 LATS1O95835 1130 aa13.06□□□□□ -0.32
TRIM28-212ENST00000597995 HOXD9P28356 352 aaPredicted RBP13.06□□□□□ -0.32
TRIM28-212ENST00000597995 MXI1P50539 228 aa13.06□□□□□ -0.32
TRIM28-212ENST00000597995 ZBTB16Q05516 673 aa13.06□□□□□ -0.32
TRIM28-212ENST00000597995 MORC3Q14149 939 aa13.06□□□□□ -0.32
TRIM28-212ENST00000597995 TEAD4Q15561 434 aa13.06□□□□□ -0.32
TRIM28-212ENST00000597995 KIAA0907Q7Z7F0 614 aaPredicted RBP13.06□□□□□ -0.32
TRIM28-212ENST00000597995 FBXL13Q8NEE6 735 aa13.06□□□□□ -0.32
TRIM28-212ENST00000597995 RHBDD1Q8TEB9 315 aa13.06□□□□□ -0.32
TRIM28-212ENST00000597995 SLC35C1Q96A29 364 aa13.06□□□□□ -0.32
TRIM28-212ENST00000597995 IRX2Q9BZI1 471 aaPredicted RBP13.06□□□□□ -0.32
TRIM28-212ENST00000597995 ULBP1Q9BZM6 244 aa13.06□□□□□ -0.32
TRIM28-212ENST00000597995 LHX5Q9H2C1 402 aa13.06□□□□□ -0.32
TRIM28-212ENST00000597995 PLA2G4CQ9UP65 541 aa13.06□□□□□ -0.32
TRIM28-212ENST00000597995 COQ4Q9Y3A0 265 aa13.06□□□□□ -0.32
TRIM28-212ENST00000597995 PTPRBP23467 1997 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 A0A1B0GVT2 93 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 XPO1O14980 1071 aaKnown RBP13.05□□□□□ -0.32
TRIM28-212ENST00000597995 HLA-FP30511 346 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 ACSL1P33121 698 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 GRIA4P48058 902 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 CSNK1EP49674 416 aaKnown RBP13.05□□□□□ -0.32
TRIM28-212ENST00000597995 BCAT1P54687 386 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 LRRC63Q05C16 580 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 FNDC3BQ53EP0 1204 aaKnown RBP13.05□□□□□ -0.32
TRIM28-212ENST00000597995 DCAF17Q5H9S7 520 aaPredicted RBP13.05□□□□□ -0.32
TRIM28-212ENST00000597995 ADGRF1Q5T601 910 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 TTI2Q6NXR4 508 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 BHLHA9Q7RTU4 235 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 FAM124AQ86V42 546 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 FMNL3Q8IVF7 1028 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 SCML4Q8N228 414 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.05□□□□□ -0.32
TRIM28-212ENST00000597995 RNF139Q8WU17 664 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 TMA16Q96EY4 203 aaKnown RBP13.05□□□□□ -0.32
TRIM28-212ENST00000597995 DHTKD1Q96HY7 919 aaPredicted RBP13.05□□□□□ -0.32
TRIM28-212ENST00000597995 TSG101Q99816 390 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 LRRC4Q9HBW1 653 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 TOR4AQ9NXH8 423 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.05□□□□□ -0.32
TRIM28-212ENST00000597995 APC2O95996 2303 aa13.05□□□□□ -0.32
TRIM28-212ENST00000597995 NUMA1Q14980 2115 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 BIN1O00499 593 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 ATP5BP06576 529 aaKnown RBP13.04□□□□□ -0.32
TRIM28-212ENST00000597995 HLA-EP13747 358 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 RPS14P62263 151 aaKnown RBP13.04□□□□□ -0.32
TRIM28-212ENST00000597995 KIF19Q2TAC6 998 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 MPP7Q5T2T1 576 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 TCERG1LQ5VWI1 586 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 BSPRYQ5W0U4 402 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 C19orf48Q6RUI8 117 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 CHST9Q7L1S5 443 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 PDZD3Q86UT5 571 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 ADIPOR2Q86V24 386 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 AHI1Q8N157 1196 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 GALNT15Q8N3T1 639 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 KCTD13Q8WZ19 329 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 SNX19Q92543 992 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 GOLGA1Q92805 767 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 IGSF8Q969P0 613 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 IPO9Q96P70 1041 aaKnown RBP13.04□□□□□ -0.32
TRIM28-212ENST00000597995 BTBD1Q9H0C5 482 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 C6orf106Q9H6K1 298 aaPredicted RBP13.04□□□□□ -0.32
TRIM28-212ENST00000597995 TM9SF3Q9HD45 589 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 PRSS16Q9NQE7 514 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 ABCC13Q9NSE7 274 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 HESX1Q9UBX0 185 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 SUN2Q9UH99 717 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 HOOK1Q9UJC3 728 aaKnown RBP13.04□□□□□ -0.32
TRIM28-212ENST00000597995 ANKRD6Q9Y2G4 727 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 SNX11Q9Y5W9 270 aa13.04□□□□□ -0.32
TRIM28-212ENST00000597995 GOLGA4Q13439 2230 aaKnown RBP13.03□□□□□ -0.32
TRIM28-212ENST00000597995 ITPR1Q14643 2758 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms