RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 PRSS16Q9NQE7 514 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 GDF3Q9NR23 364 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 SCML1Q9UN30 329 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 NCKAP1Q9Y2A7 1128 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.6□□□□□ -0.71
TRIM28-210ENST00000597618 PTPN13Q12923 2485 aa10.6□□□□□ -0.71
TRIM28-210ENST00000597618 LRRIQ3A6PVS8 624 aaPredicted RBP10.59□□□□□ -0.71
TRIM28-210ENST00000597618 VNN1O95497 513 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 RPN1P04843 607 aaKnown RBP10.59□□□□□ -0.71
TRIM28-210ENST00000597618 GLDCP23378 1020 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 HOXD9P28356 352 aaPredicted RBP10.59□□□□□ -0.71
TRIM28-210ENST00000597618 HLA-FP30511 346 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 ASPAP45381 313 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 PCBP4P57723 403 aaKnown RBP10.59□□□□□ -0.71
TRIM28-210ENST00000597618 TMPRSS3P57727 454 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 ZNF445P59923 1031 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 CLDN10P78369 228 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 AMPD3Q01432 767 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 INCA1Q0VD86 236 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 KCNH2Q12809 1159 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 SHBQ15464 509 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 PRAMEF14Q5SWL7 426 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 BROXQ5VW32 411 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 CHST9Q7L1S5 443 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 RSRC2Q7L4I2 434 aaKnown RBP10.59□□□□□ -0.71
TRIM28-210ENST00000597618 OXR1Q8N573 874 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 PDILTQ8N807 584 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 ZNF248Q8NDW4 579 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 PLEKHO2Q8TD55 490 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 GANCQ8TET4 914 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 PARD3BQ8TEW8 1205 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 ELMO3Q96BJ8 720 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 PLD4Q96BZ4 506 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 CYFIP2Q96F07 1278 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 DNAI2Q9GZS0 605 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 PABPC3Q9H361 631 aaKnown RBP10.59□□□□□ -0.71
TRIM28-210ENST00000597618 CUEDC2Q9H467 287 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 AASDHPPTQ9NRN7 309 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 MARCH2Q9P0N8 246 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 TFIP11Q9UBB9 837 aaKnown RBP10.59□□□□□ -0.71
TRIM28-210ENST00000597618 CLCA2Q9UQC9 943 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 USP3Q9Y6I4 520 aa10.59□□□□□ -0.71
TRIM28-210ENST00000597618 MORC2Q9Y6X9 1032 aaPredicted RBP10.59□□□□□ -0.71
TRIM28-210ENST00000597618 SLC12A8A0AV02 714 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 VPS37CA5D8V6 355 aaPredicted RBP10.58□□□□□ -0.72
TRIM28-210ENST00000597618 FAM47DPA6NHR8 397 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 LRRC72A6NJI9 287 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 ARHGAP6O43182 974 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 C4BPAP04003 597 aaKnown RBP10.58□□□□□ -0.72
TRIM28-210ENST00000597618 WNT1P04628 370 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 ATP5BP06576 529 aaKnown RBP10.58□□□□□ -0.72
TRIM28-210ENST00000597618 DLDP09622 509 aaKnown RBP10.58□□□□□ -0.72
TRIM28-210ENST00000597618 CKMT2P17540 419 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 CD38P28907 300 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 HARS2P49590 506 aaKnown RBP10.58□□□□□ -0.72
TRIM28-210ENST00000597618 KCNC4Q03721 635 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 PKDCCQ504Y2 493 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 SLC45A4Q5BKX6 768 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 SFMBT2Q5VUG0 894 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 CNNM4Q6P4Q7 775 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 NCEH1Q6PIU2 408 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 ADIPOR2Q86V24 386 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.58□□□□□ -0.72
TRIM28-210ENST00000597618 DCBLD1Q8N8Z6 715 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 FAM181AQ8N9Y4 354 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 GOLGA5Q8TBA6 731 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 TWNKQ96RR1 684 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 ARID3AQ99856 593 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 NT5C1AQ9BXI3 368 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 RSPH9Q9H1X1 276 aaPredicted RBP10.58□□□□□ -0.72
TRIM28-210ENST00000597618 ABCB8Q9NUT2 735 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 KBTBD4Q9NVX7 518 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 FBXL12Q9NXK8 326 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 SUN2Q9UH99 717 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 ADAMTS1Q9UHI8 967 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 GGA2Q9UJY4 613 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 TPX2Q9ULW0 747 aaKnown RBP10.58□□□□□ -0.72
TRIM28-210ENST00000597618 PIEZO2Q9H5I5 2752 aa10.58□□□□□ -0.72
TRIM28-210ENST00000597618 B8ZZF3 427 aa10.57□□□□□ -0.72
TRIM28-210ENST00000597618 RNASEH1O60930 286 aaKnown RBP10.57□□□□□ -0.72
TRIM28-210ENST00000597618 KIF20AO95235 890 aa10.57□□□□□ -0.72
TRIM28-210ENST00000597618 ASS1P00966 412 aaKnown RBP10.57□□□□□ -0.72
TRIM28-210ENST00000597618 PABPC1P11940 636 aaKnown RBP10.57□□□□□ -0.72
TRIM28-210ENST00000597618 C6P13671 934 aa10.57□□□□□ -0.72
TRIM28-210ENST00000597618 RXRGP48443 463 aa10.57□□□□□ -0.72
TRIM28-210ENST00000597618 GALCP54803 685 aa10.57□□□□□ -0.72
TRIM28-210ENST00000597618 NXPH1P58417 271 aa10.57□□□□□ -0.72
TRIM28-210ENST00000597618 YWHAGP61981 247 aaKnown RBP eCLIP10.57□□□□□ -0.72
TRIM28-210ENST00000597618 INSM1Q01101 510 aaPredicted RBP10.57□□□□□ -0.72
TRIM28-210ENST00000597618 CEBPZQ03701 1054 aaKnown RBP10.57□□□□□ -0.72
TRIM28-210ENST00000597618 TRIP4Q15650 581 aaPredicted RBP10.57□□□□□ -0.72
TRIM28-210ENST00000597618 KNOP1Q1ED39 458 aaKnown RBP10.57□□□□□ -0.72
TRIM28-210ENST00000597618 ZACNQ401N2 412 aa10.57□□□□□ -0.72
TRIM28-210ENST00000597618 MBLAC2Q68D91 279 aa10.57□□□□□ -0.72
TRIM28-210ENST00000597618 KIAA0907Q7Z7F0 614 aaPredicted RBP10.57□□□□□ -0.72
TRIM28-210ENST00000597618 FMNL3Q8IVF7 1028 aa10.57□□□□□ -0.72
TRIM28-210ENST00000597618 OR2T34Q8NGX1 318 aa10.57□□□□□ -0.72
TRIM28-210ENST00000597618 ZNF578Q96N58 590 aaPredicted RBP10.57□□□□□ -0.72
TRIM28-210ENST00000597618 DUSP16Q9BY84 665 aa10.57□□□□□ -0.72
TRIM28-210ENST00000597618 ERVMER34-1Q9H9K5 563 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms