RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	ALPK3	Q96L96	1907 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	SYNJ2BP-COX16	A0A087WUM0	186 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	SKAP2	O75563	359 aa	Predicted RBP	15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	ETS1	P14921	441 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	MAGEA11	P43364	429 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	NME3	Q13232	169 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	SDHAF4	Q5VUM1	108 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	CWF19L1	Q69YN2	538 aa	Known RBP	15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	BEND5	Q7L4P6	421 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	TRPM8	Q7Z2W7	1104 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	CCDC89	Q8N998	374 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	DRAXIN	Q8NBI3	349 aa	Predicted RBP	15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	STKLD1	Q8NE28	680 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	SNF8	Q96H20	258 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	C8orf48	Q96LL4	319 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	ZNF570	Q96NI8	536 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	ZNF317	Q96PQ6	595 aa	Predicted RBP	15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	CSPG4P5	Q96PW8	444 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	SLC9A7	Q96T83	725 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	TTPAL	Q9BTX7	342 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	MAK16	Q9BXY0	300 aa	Known RBP	15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	CRISPLD1	Q9H336	500 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	C10orf88	Q9H8K7	445 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	PRDM5	Q9NQX1	630 aa	Predicted RBP	15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	RRN3	Q9NYV6	651 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	COX16	Q9P0S2	106 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	CTNNAL1	Q9UBT7	734 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	NOVA2	Q9UNW9	492 aa	Known RBP	15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	PPFIA2	O75334	1257 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	RTN3	O95197	1032 aa	Predicted RBP	15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	VIM	P08670	466 aa	Known RBP	15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	ZSCAN5DP	P0CG00	497 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	HSPA1A	P0DMV8	641 aa	Known RBP	15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	HSPA1B	P0DMV9	641 aa	Known RBP	15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	PEX19	P40855	299 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	ALDH7A1	P49419	539 aa	Known RBP	15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	CTCF	P49711	727 aa	Predicted RBP	15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	VPS41	P49754	854 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	GDF10	P55107	478 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	GPR17	Q13304	367 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	EIF4EBP2	Q13542	120 aa	Predicted RBP	15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	DDR2	Q16832	855 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	ZNF365	Q70YC5	407 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	SCD5	Q86SK9	330 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	SCN4B	Q8IWT1	228 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	AGAP11	Q8TF27	550 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	IGSF21	Q96ID5	467 aa		15.92	■□□□□ 0.14
DDX39A-209	ENST00000589318	KIAA1671	Q9BY89	1806 aa		15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	MTMR11	A4FU01	709 aa		15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	APOL1	O14791	398 aa		15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	IGLV3-25	P01717	112 aa		15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	ATF2	P15336	505 aa		15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	ITIH2	P19823	946 aa		15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	TGM2	P21980	687 aa		15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	PAPOLA	P51003	745 aa	Known RBP	15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	EIF3E	P60228	445 aa	Known RBP	15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	MAGOH	P61326	146 aa	Known RBP	15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	WDR5	P61964	334 aa	Known RBP	15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	MRPS35	P82673	323 aa	Known RBP	15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	MFSD5	Q6N075	450 aa		15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	PRSS55	Q6UWB4	352 aa	Predicted RBP	15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	RNF19B	Q6ZMZ0	732 aa		15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	ANKS3	Q6ZW76	656 aa		15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	GSTA5	Q7RTV2	222 aa		15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	TAC4	Q86UU9	113 aa		15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	KIRREL3	Q8IZU9	778 aa		15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	NTAN1	Q96AB6	310 aa		15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	ADAM7	Q9H2U9	754 aa		15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	DDIT4	Q9NX09	232 aa		15.91	■□□□□ 0.14
DDX39A-209	ENST00000589318	RBP3	P10745	1247 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	GOT1	P17174	413 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	ADRA1B	P35368	520 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	ADCY8	P40145	1251 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	ITGA8	P53708	1063 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	YWHAG	P61981	247 aa	Known RBP eCLIP	15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	DHX9	Q08211	1270 aa	Known RBP	15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	SCAP	Q12770	1279 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	CALCOCO2	Q13137	446 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	C1orf228	Q6PIY5	440 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	UBE2Q1	Q7Z7E8	422 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	UNC45B	Q8IWX7	931 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	DQX1	Q8TE96	717 aa	Known RBP	15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	PAIP2	Q9BPZ3	127 aa	Known RBP	15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	EPB41L4B	Q9H329	900 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	PCDH9	Q9HC56	1237 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	AAAS	Q9NRG9	546 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	IL37	Q9NZH6	218 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	RCOR3	Q9P2K3	495 aa	Predicted RBP	15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	FBXW11	Q9UKB1	542 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	LAMA2	P24043	3122 aa	Known RBP	15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318		H7C4K7	107 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	MCF2L	O15068	1137 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	ADAM12	O43184	909 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	DIAPH2	O60879	1101 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	SOAT2	O75908	522 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	ACR	P10323	421 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	CPB1	P15086	417 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	RAG1	P15918	1043 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	ATP2A2	P16615	1042 aa	Known RBP	15.9	■□□□□ 0.14

Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms