RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 CCNL1Q9UK58 526 aaPredicted RBP4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 LZTS1Q9Y250 596 aa4.25□□□□□ -1.73
SMCHD1-209ENST00000583441 PRSS44E7EML9 344 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 H0Y3Z8 333 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 GCOM1H8Y6P7 765 aaPredicted RBP4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 EIF3FO00303 357 aaPredicted RBP4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 TAF5LO75529 589 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 GAS8-AS1O95177 125 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 TTLL1O95922 423 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 TK1P04183 234 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 NPSP0C0P6 89 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 MYCLP12524 364 aaPredicted RBP4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 NDUFB7P17568 137 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 DRD1P21728 446 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 KLRK1P26718 216 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 PNLIPRP1P54315 467 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 PDE1AP54750 535 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 LINC00205P59089 165 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 ACTR2P61160 394 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 TXNL4AP83876 142 aaKnown RBP4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 SEMA3BQ13214 749 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 KCNJ12Q14500 433 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 GRM4Q14833 912 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 RPS6KA2Q15349 733 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 TAF5Q15542 800 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 P3H1Q32P28 736 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 AASDHQ4L235 1098 aaPredicted RBP4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 TMEM196Q5HYL7 178 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 PXDC1Q5TGL8 231 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 FAM90A2PQ658T7 463 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 SLC18B1Q6NT16 456 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 CCDC144NLQ6NUI1 221 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 PTCHD4Q6ZW05 846 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 PARS2Q7L3T8 475 aaKnown RBP4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 KRT27Q7Z3Y8 459 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 ZNF804AQ7Z570 1209 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 C2CD5Q86YS7 1000 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 P3H2Q8IVL5 708 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 METTL25Q8N6Q8 603 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 C11orf44Q8N8P7 122 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 PNPLA1Q8N8W4 532 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 ABHD11Q8NFV4 315 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 RFKQ969G6 155 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 C3orf49Q96BT1 292 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 EVI5LQ96CN4 794 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 TRAPPC9Q96Q05 1148 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 CINPQ9BW66 212 aaPredicted RBP4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 TWSG1Q9GZX9 223 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 BRD8Q9H0E9 1235 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 VPS16Q9H269 839 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 TAF1DQ9H5J8 278 aaPredicted RBP4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 G6PC2Q9NQR9 355 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 FSCN3Q9NQT6 498 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 ARHGEF3Q9NR81 526 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 PDP2Q9P2J9 529 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 ADAM21Q9UKJ8 722 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 AMFRQ9UKV5 643 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 DAPP1Q9UN19 280 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 CNTN6Q9UQ52 1028 aa4.24□□□□□ -1.73
SMCHD1-209ENST00000583441 FAM90A18PA6NE21 464 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 FAM90A16PA6NEW6 464 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 FAM90A9PA6NNJ1 464 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 FAM90A5PA8MXJ8 464 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 CTIFO43310 598 aaKnown RBP4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 RPP40O75818 363 aaKnown RBP4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 VNN1O95497 513 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 LATS1O95835 1130 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 TFRCP02786 760 aaKnown RBP4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 FAM90A15PP0C7V4 464 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 FAM90A14PP0C7W9 464 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 NR2F6P10588 404 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 GYS1P13807 737 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 CREB1P16220 341 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 MATN1P21941 496 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 SERPINA4P29622 427 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 PBX1P40424 430 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 SF3A3Q12874 501 aaKnown RBP eCLIP4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 BTBD16Q32M84 506 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 FAM153CQ494X1 144 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 ZNF569Q5MCW4 686 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 MSANTD2Q6P1R3 559 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 PIK3AP1Q6ZUJ8 805 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 Q6ZWC4 215 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 SFTPA1Q8IWL2 248 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 TEX19Q8NA77 164 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 OR1N1Q8NGS0 311 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 SCAMP5Q8TAC9 235 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 HMGB4Q8WW32 186 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 WDYHV1Q96HA8 205 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 PRR25Q96S07 402 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 QTRT1Q9BXR0 403 aaKnown RBP4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 KCNK9Q9NPC2 374 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 SERTAD4Q9NUC0 356 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 LIN7CQ9NUP9 197 aaKnown RBP4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 TUBA8Q9NY65 449 aaPredicted RBP4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 C9orf78Q9NZ63 289 aaPredicted RBP4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 FEM1BQ9UK73 627 aa4.23□□□□□ -1.73
SMCHD1-209ENST00000583441 HMGB1P1B2RPK0 211 aaPredicted RBP4.22□□□□□ -1.73
SMCHD1-209ENST00000583441 VWC2LB2RUY7 222 aa4.22□□□□□ -1.73
SMCHD1-209ENST00000583441 QSOX1O00391 747 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms