RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 MAGED2Q9UNF1 606 aaPredicted RBP10.88□□□□□ -0.67
SS18-217ENST00000580958 INSL6Q9Y581 213 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 ATG2AQ2TAZ0 1938 aa10.88□□□□□ -0.67
SS18-217ENST00000580958 TP73O15350 636 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 PPFIA2O75334 1257 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 PAGE1O75459 146 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 ZDHHC11BP0C7U3 371 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 LINC00271P0C7V0 271 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 CA8P35219 290 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 RPL22P35268 128 aaKnown RBP10.87□□□□□ -0.67
SS18-217ENST00000580958 TBX4P57082 545 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 FAM193AP78312 1265 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 CAV1Q03135 178 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 PPP2R5DQ14738 602 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 UAP1Q16222 522 aaPredicted RBP10.87□□□□□ -0.67
SS18-217ENST00000580958 CFAP58Q5T655 872 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 RHBDF2Q6PJF5 856 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 TMC3Q7Z5M5 1100 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 CDKL3Q8IVW4 592 aaPredicted RBP10.87□□□□□ -0.67
SS18-217ENST00000580958 CCDC33Q8N5R6 958 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 FAM71DQ8N9W8 422 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 KLHL23Q8NBE8 558 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 NETO2Q8NC67 525 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 ZNF461Q8TAF7 563 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 SERPINB11Q96P15 392 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 QKIQ96PU8 341 aaKnown RBP eCLIP10.87□□□□□ -0.677e-15■■■■■ 35.3
SS18-217ENST00000580958 RAD9AQ99638 391 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 EPAS1Q99814 870 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 OSBPL2Q9H1P3 480 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 MRPL17Q9NRX2 175 aaKnown RBP10.87□□□□□ -0.67
SS18-217ENST00000580958 CLIC5Q9NZA1 410 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 OGFRQ9NZT2 677 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 TPX2Q9ULW0 747 aaKnown RBP10.87□□□□□ -0.67
SS18-217ENST00000580958 YIPF1Q9Y548 306 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 SLC4A7Q9Y6M7 1214 aa10.87□□□□□ -0.67
SS18-217ENST00000580958 MYO7AQ13402 2215 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 HELZP42694 1942 aaKnown RBP10.86□□□□□ -0.67
SS18-217ENST00000580958 BCLAF3A2AJT9 711 aaKnown RBP10.86□□□□□ -0.67
SS18-217ENST00000580958 LCHNA4D1U4 455 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 CFAP69A5D8W1 941 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 GOLGA6BA6NDN3 693 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 KCNU1A8MYU2 1149 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 DCLK1O15075 740 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 TEX28O15482 410 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 KCNN4O15554 427 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 LILRB3O75022 631 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 TBX18O95935 607 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 MOCS2O96007 188 aaPredicted RBP10.86□□□□□ -0.67
SS18-217ENST00000580958 CTSAP10619 480 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 ERCC2P18074 760 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 RBL1P28749 1068 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 CCR1P32246 355 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 CHKAP35790 457 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 HSD17B3P37058 310 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 HCAR3P49019 387 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 NR2C2P49116 596 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 ZNF135P52742 658 aaPredicted RBP10.86□□□□□ -0.67
SS18-217ENST00000580958 NRLP54845 237 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 XRCC4Q13426 336 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 PAFAH1B3Q15102 231 aaKnown RBP10.86□□□□□ -0.67
SS18-217ENST00000580958 SLC45A4Q5BKX6 768 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 C10orf120Q5SQS8 335 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 FAM182AQ5T1J6 154 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 ALS2CLQ60I27 953 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 HIBCHQ6NVY1 386 aaPredicted RBP10.86□□□□□ -0.67
SS18-217ENST00000580958 CCDC25Q86WR0 208 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 TAB3Q8N5C8 712 aaPredicted RBP10.86□□□□□ -0.67
SS18-217ENST00000580958 UBLCP1Q8WVY7 318 aaPredicted RBP10.86□□□□□ -0.67
SS18-217ENST00000580958 CLP1Q92989 425 aaKnown RBP10.86□□□□□ -0.67
SS18-217ENST00000580958 SLC39A13Q96H72 371 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 FCRL2Q96LA5 508 aaPredicted RBP10.86□□□□□ -0.67
SS18-217ENST00000580958 CEP295NLQ96MC4 621 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 OLFM3Q96PB7 478 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 ZIM3Q96PE6 472 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 HAPLN3Q96S86 360 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 UBE2OQ9C0C9 1292 aaKnown RBP10.86□□□□□ -0.67
SS18-217ENST00000580958 SIK2Q9H0K1 926 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 ADAM7Q9H2U9 754 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 CCSER2Q9H7U1 834 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 USP29Q9HBJ7 922 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 RXFP1Q9HBX9 757 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.86□□□□□ -0.67
SS18-217ENST00000580958 OLA1Q9NTK5 396 aaKnown RBP10.86□□□□□ -0.67
SS18-217ENST00000580958 DTLQ9NZJ0 730 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 FNIP2Q9P278 1114 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 HSFX1Q9UBD0 423 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 OR12D3Q9UGF7 316 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 ATP8A1Q9Y2Q0 1164 aa10.86□□□□□ -0.67
SS18-217ENST00000580958 CHD5Q8TDI0 1954 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 SLC12A8A0AV02 714 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 H3BQF6 201 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 AGPSO00116 658 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 PRRG1O14668 218 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 TLL1O43897 1013 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 LRIG2O94898 1065 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 HMBSP08397 361 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 CSH1P0DML2 217 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 CSH2P0DML3 217 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 VAV1P15498 845 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 ATP2A2P16615 1042 aaKnown RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms