RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 RFX6Q8HWS3 928 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 LZTR1Q8N653 840 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 PRELID2Q8N945 189 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 MYRIPQ8NFW9 859 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 PCDH19Q8TAB3 1148 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 CCDC26Q8TAB7 109 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 RUBCNQ92622 972 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 SLCO2A1Q92959 643 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 NKD2Q969F2 451 aaPredicted RBP15.79■□□□□ 0.12
SS18-215ENST00000580642 ACSF2Q96CM8 615 aaPredicted RBP15.79■□□□□ 0.12
SS18-215ENST00000580642 HEMGNQ9BXL5 484 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 BRD8Q9H0E9 1235 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 GPATCH2LQ9NWQ4 482 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 PCYOX1Q9UHG3 505 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 LSM7Q9UK45 103 aaKnown RBP15.79■□□□□ 0.12
SS18-215ENST00000580642 COLQQ9Y215 455 aaPredicted RBP15.79■□□□□ 0.12
SS18-215ENST00000580642 HS3ST4Q9Y661 456 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 CHD9Q3L8U1 2897 aa15.79■□□□□ 0.12
SS18-215ENST00000580642 RANBP2P49792 3224 aaKnown RBP15.78■□□□□ 0.12
SS18-215ENST00000580642 IGLV3-10A0A075B6K4 115 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 WASH4PA8MWX3 477 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 RFXAPO00287 272 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 NCAM2O15394 837 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 DAPK3O43293 454 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 ACSL4O60488 711 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 MOSPD3O75425 235 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 STC2O76061 302 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 LRIG2O94898 1065 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 CKMP06732 381 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 KRT10P13645 584 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 SERPINB6P35237 376 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 GTF2F1P35269 517 aaKnown RBP eCLIP15.78■□□□□ 0.12
SS18-215ENST00000580642 XRCC4Q13426 336 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 DHX34Q14147 1143 aaKnown RBP15.78■□□□□ 0.12
SS18-215ENST00000580642 PAFAH1B3Q15102 231 aaKnown RBP15.78■□□□□ 0.12
SS18-215ENST00000580642 CTC1Q2NKJ3 1217 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 MS4A13Q5J8X5 152 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 TTC39BQ5VTQ0 682 aaPredicted RBP15.78■□□□□ 0.12
SS18-215ENST00000580642 TXNDC8Q6A555 127 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 ANKRD54Q6NXT1 300 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 HTR3DQ70Z44 454 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 GRASPQ7Z6J2 395 aaPredicted RBP15.78■□□□□ 0.12
SS18-215ENST00000580642 LRRC49Q8IUZ0 686 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 PQLC3Q8N755 202 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 PLD5Q8N7P1 536 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 GRK7Q8WTQ7 553 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 UBXN4Q92575 508 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 P3H4Q92791 437 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 TBC1D31Q96DN5 1066 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 ZFRQ96KR1 1074 aaKnown RBP15.78■□□□□ 0.12
SS18-215ENST00000580642 AP1M1Q9BXS5 423 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 SLC46A2Q9BY10 475 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 KIF9Q9HAQ2 790 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 TRPC7Q9HCX4 862 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 ANLNQ9NQW6 1124 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 ARHGEF4Q9NR80 690 aa15.78■□□□□ 0.12
SS18-215ENST00000580642 RBM12Q9NTZ6 932 aaKnown RBP15.78■□□□□ 0.12
SS18-215ENST00000580642 DRG1Q9Y295 367 aaKnown RBP15.78■□□□□ 0.12
SS18-215ENST00000580642 DRGXA6NNA5 263 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 GOT1P17174 413 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 EPHB2P29323 1055 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 AVPR1AP37288 418 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 CCR2P41597 374 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 ZNF33AQ06730 810 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 AUHQ13825 339 aaKnown RBP15.77■□□□□ 0.12
SS18-215ENST00000580642 ADGRF1Q5T601 910 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 GPR158Q5T848 1215 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 KAZNQ674X7 775 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 ANKS1BQ7Z6G8 1248 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 FAM217AQ8IXS0 508 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 CMTM8Q8IZV2 173 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 ARL14EPQ8N8R7 260 aaPredicted RBP15.77■□□□□ 0.12
SS18-215ENST00000580642 MAB21L3Q8N8X9 362 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 ATL2Q8NHH9 583 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 MAGOHBQ96A72 148 aaKnown RBP15.77■□□□□ 0.12
SS18-215ENST00000580642 HAUS1Q96CS2 278 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 PRMT1Q99873 361 aaKnown RBP15.77■□□□□ 0.12
SS18-215ENST00000580642 ADAM7Q9H2U9 754 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 HCFC1R1Q9NWW0 138 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 GDE1Q9NZC3 331 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 MRPS23Q9Y3D9 190 aaKnown RBP15.77■□□□□ 0.12
SS18-215ENST00000580642 CPQQ9Y646 472 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 MTCH2Q9Y6C9 303 aa15.77■□□□□ 0.12
SS18-215ENST00000580642 TCRBV7S2A1N4TA0A589 114 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 E2F8A0AVK6 867 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 TARSL2A2RTX5 802 aaKnown RBP15.76■□□□□ 0.11
SS18-215ENST00000580642 FAM187AA6NFU0 413 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 HACD1B0YJ81 288 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 E9PAM4 449 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 DCLK1O15075 740 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 CTIFO43310 598 aaKnown RBP15.76■□□□□ 0.11
SS18-215ENST00000580642 LIASO43766 372 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 CREB3O43889 395 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 GLP2RO95838 553 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 ITGAVP06756 1048 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 RHOQP17081 205 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 MX2P20592 715 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 CORO1AP31146 461 aaKnown RBP15.76■□□□□ 0.11
SS18-215ENST00000580642 COILP38432 576 aaPredicted RBP15.76■□□□□ 0.11
SS18-215ENST00000580642 CYP4F8P98187 520 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms