RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 CDH15P55291 814 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 EGFLAMQ63HQ2 1017 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 CDHR3Q6ZTQ4 885 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 C4orf19Q8IY42 314 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 DCAKDQ8WVC6 231 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 TMIGD2Q96BF3 282 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 PCYT2Q99447 389 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 UBAP1Q9NZ09 502 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 MKI67P46013 3256 aaKnown RBP9.85□□□□□ -0.83
CCDC40-212ENST00000574799 UBE4BO95155 1302 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 F8VP50 259 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 NDUFB5O43674 189 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 LDHAP00338 332 aaKnown RBP9.85□□□□□ -0.83
CCDC40-212ENST00000574799 RPL22P35268 128 aaKnown RBP9.85□□□□□ -0.83
CCDC40-212ENST00000574799 RXRGP48443 463 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 THOC7Q6I9Y2 204 aaKnown RBP9.85□□□□□ -0.83
CCDC40-212ENST00000574799 SNRNP48Q6IEG0 339 aaKnown RBP9.85□□□□□ -0.83
CCDC40-212ENST00000574799 CCDC60Q8IWA6 550 aaPredicted RBP9.85□□□□□ -0.83
CCDC40-212ENST00000574799 MARVELD2Q8N4S9 558 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 TMEM161BQ8NDZ6 487 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 ATP6V0A1Q93050 837 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 SLITRK1Q96PX8 696 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 FAM213AQ9BRX8 229 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 EFHD1Q9BUP0 239 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 FAM96AQ9H5X1 160 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 AVENQ9NQS1 362 aaPredicted RBP9.85□□□□□ -0.83
CCDC40-212ENST00000574799 RNF146Q9NTX7 359 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 PLLPQ9Y342 182 aa9.85□□□□□ -0.83
CCDC40-212ENST00000574799 GPC6Q9Y625 555 aaPredicted RBP9.85□□□□□ -0.83
CCDC40-212ENST00000574799 RNF103-CHMP3A0A140T963 221 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 PIK3R2O00459 728 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 DDNO94850 711 aaPredicted RBP9.84□□□□□ -0.83
CCDC40-212ENST00000574799 MAP3K6O95382 1288 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 SMIM18P0DKX4 95 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 SAT1P21673 171 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 RPL7AP62424 266 aaKnown RBP9.84□□□□□ -0.83
CCDC40-212ENST00000574799 GRM2Q14416 872 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 NR1D2Q14995 579 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 XKR9Q5GH70 373 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 OGFOD2Q6N063 350 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 XKR5Q6UX68 686 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 C16orf89Q6UX73 402 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 ABHD15Q6UXT9 468 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 MYO1HQ8N1T3 1032 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 SPATA18Q8TC71 538 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 CPT1BQ92523 772 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 UPF1Q92900 1129 aaKnown RBP eCLIP9.84□□□□□ -0.83
CCDC40-212ENST00000574799 BORCS5Q969J3 196 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 ATXN7L3BQ96GX2 97 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 TRPC7Q9HCX4 862 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 ARHGEF4Q9NR80 690 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 TUBA8Q9NY65 449 aaPredicted RBP9.84□□□□□ -0.83
CCDC40-212ENST00000574799 SORCS3Q9UPU3 1222 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 CAPN14A8MX76 684 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 ADM5C9JUS6 153 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 ATG7O95352 703 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 GSTT2P0CG29 244 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 GSTT2BP0CG30 244 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 COX4I1P13073 169 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 QARSP47897 775 aaKnown RBP9.84□□□□□ -0.83
CCDC40-212ENST00000574799 TSPY1Q01534 308 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 CNTN2Q02246 1040 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 SP4Q02446 784 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 WASHC5Q12768 1159 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 PPP2R5DQ14738 602 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 GPR107Q5VW38 600 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 SNX32Q86XE0 403 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 BBS5Q8N3I7 341 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 SLC44A1Q8WWI5 657 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 PGBD4Q96DM1 585 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 TSNARE1Q96NA8 513 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 TMEM8AQ9HCN3 771 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 PNPOQ9NVS9 261 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 UTP6Q9NYH9 597 aaKnown RBP9.84□□□□□ -0.83
CCDC40-212ENST00000574799 DAPK2Q9UIK4 370 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 SSX2IPQ9Y2D8 614 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 TMED5Q9Y3A6 229 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 FIS1Q9Y3D6 152 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 FADS3Q9Y5Q0 445 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 DYTNA2CJ06 578 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 BTBD19C9JJ37 291 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 J3QRK9 145 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 BIRC5O15392 142 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 OSBPP22059 807 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 OAZ1P54368 228 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 TRAF2Q12933 501 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 RGS21Q2M5E4 152 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 SV2AQ7L0J3 742 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 MCF2L2Q86YR7 1114 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 C12orf56Q8IXR9 622 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 FBXL8Q96CD0 374 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 CCDC106Q9BWC9 280 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 MRPL46Q9H2W6 279 aaKnown RBP9.84□□□□□ -0.83
CCDC40-212ENST00000574799 PALMDQ9NP74 551 aa9.84□□□□□ -0.83
CCDC40-212ENST00000574799 WARS2Q9UGM6 360 aaKnown RBP9.84□□□□□ -0.83
CCDC40-212ENST00000574799 SCN4AP35499 1836 aa9.83□□□□□ -0.84
CCDC40-212ENST00000574799 IGKV6D-21A0A0A0MT36 114 aa9.83□□□□□ -0.84
CCDC40-212ENST00000574799 SPATA31C2B4DYI2 1134 aa9.83□□□□□ -0.84
CCDC40-212ENST00000574799 PSMD12O00232 456 aaPredicted RBP9.83□□□□□ -0.84
CCDC40-212ENST00000574799 CCNT2O60583 730 aaKnown RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms