RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CSPG4P5Q96PW8 444 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 VAT1Q99536 393 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 RAD9AQ99638 391 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 TTLL2Q9BWV7 592 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 UBE2OQ9C0C9 1292 aaKnown RBP8.25□□□□□ -1.09
VPS39-213ENST00000570062 STMN4Q9H169 189 aaPredicted RBP8.25□□□□□ -1.09
VPS39-213ENST00000570062 PPCSQ9HAB8 311 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 TMLHEQ9NVH6 421 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 HAUS2Q9NVX0 235 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 ZNF446Q9NWS9 450 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 FAM53CQ9NYF3 392 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 DPP7Q9UHL4 492 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 DNPEPQ9ULA0 475 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 SHOC2Q9UQ13 582 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 NAALADL1Q9UQQ1 740 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 LZTS1Q9Y250 596 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 TLR6Q9Y2C9 796 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 SNX24Q9Y343 169 aa8.25□□□□□ -1.09
VPS39-213ENST00000570062 PDCD11Q14690 1871 aaKnown RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 TRIOBPQ9H2D6 2365 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 TRIM43BA6NCK2 446 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 H7C0C1 242 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 EEF2KO00418 725 aaKnown RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 DNALI1O14645 258 aaPredicted RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 LPXNO60711 386 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 ABLIM3O94929 683 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 SEC31AO94979 1220 aaKnown RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 GJB5O95377 273 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 FGF19O95750 216 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 IGLV3-25P01717 112 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 APOEP02649 317 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 FYNP06241 537 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 TCF4P15884 667 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 PFKLP17858 780 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 IL4RP24394 825 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 IGFBP6P24592 240 aaPredicted RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 KLRC2P26717 231 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 RPL21P46778 160 aaKnown RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 ATP5OP48047 213 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 KCNJ1P48048 391 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 TUBP50607 506 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 CDR1P51861 262 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 HTRA4P83105 476 aaPredicted RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 CDK16Q00536 496 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 UBE3AQ05086 875 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 RING1Q06587 406 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 EIF4EBP2Q13542 120 aaPredicted RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 PAFAH1B3Q15102 231 aaKnown RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 TAF12Q16514 161 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 RTP2Q5QGT7 225 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 SH3PXD2AQ5TCZ1 1133 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 SYPL2Q5VXT5 272 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 NUGGCQ68CJ6 796 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 TXNRD3NBQ6F5E7 133 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 PDE12Q6L8Q7 609 aaKnown RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 LRRC31Q6UY01 552 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 CYP4V2Q6ZWL3 525 aaPredicted RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 UBE2Q1Q7Z7E8 422 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 FAM131BQ86XD5 332 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 PPIL6Q8IXY8 311 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 IQCKQ8N0W5 287 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 ATP6V0D2Q8N8Y2 350 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 COLGALT1Q8NBJ5 622 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 PCDH19Q8TAB3 1148 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 DQX1Q8TE96 717 aaKnown RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 AZIN2Q96A70 460 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 TRIM43Q96BQ3 446 aaPredicted RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 SAMD11Q96NU1 681 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 PEBP4Q96S96 227 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 TMEM209Q96SK2 561 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 DDX50Q9BQ39 737 aaKnown RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 LBHD1Q9BQE6 289 aaPredicted RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 EMILIN2Q9BXX0 1053 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 ROPN1BQ9BZX4 212 aaPredicted RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 KLC2Q9H0B6 622 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 TKTL2Q9H0I9 626 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 DPH5Q9H2P9 285 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 PABPC3Q9H361 631 aaKnown RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 ROPN1Q9HAT0 212 aaPredicted RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 RC3H2Q9HBD1 1191 aaKnown RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 RXFP1Q9HBX9 757 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 ZDHHC18Q9NUE0 388 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 ARHGEF38Q9NXL2 777 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 NEU2Q9Y3R4 380 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 HBS1LQ9Y450 684 aaKnown RBP8.24□□□□□ -1.09
VPS39-213ENST00000570062 CDY1Q9Y6F8 540 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 SCN1AP35498 2009 aa8.24□□□□□ -1.09
VPS39-213ENST00000570062 ESYT3A0FGR9 886 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 GOLGA6CA6NDK9 693 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 C5orf60A6NFR6 353 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 SOBPA7XYQ1 873 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 IRAK2O43187 625 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 PSMD3O43242 534 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 B4GALT3O60512 393 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 GCATO75600 419 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 RB1P06400 928 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 IVLP07476 585 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 ZDHHC11BP0C7U3 371 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 GOLGA6DP0CG33 693 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 ATP2A2P16615 1042 aaKnown RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms