RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CALCOCO2Q13137 446 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 ASIC2Q16515 512 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 ANGPTL6Q8NI99 470 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 BTBD9Q96Q07 612 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 SLC29A1Q99808 456 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 ZC4H2Q9NQZ6 224 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 C2orf71A6NGG8 1288 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 GAS7O60861 476 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 CRTAMO95727 393 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 RAG1P15918 1043 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 MAPK10P53779 464 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 RACK1P63244 317 aaKnown RBP11.14□□□□□ -0.63
CLK3-226ENST00000569406 TMPRSS15P98073 1019 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 RHAGQ02094 409 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 KCNC4Q03721 635 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 SPARCL1Q14515 664 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 SLC15A2Q16348 729 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 PLEKHG4Q58EX7 1191 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 FAM83BQ5T0W9 1011 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 ATAD3BQ5T9A4 648 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 GALNT18Q6P9A2 607 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 IRF2BP2Q7Z5L9 587 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 TMPRSS6Q8IU80 811 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 SLFN12Q8IYM2 578 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 RBM15BQ8NDT2 890 aaKnown RBP11.14□□□□□ -0.63
CLK3-226ENST00000569406 DCUN1D1Q96GG9 259 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 TBATAQ96M53 351 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 ZNF512Q96ME7 567 aaPredicted RBP11.14□□□□□ -0.63
CLK3-226ENST00000569406 TM9SF2Q99805 663 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 OSBPL8Q9BZF1 889 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 HOXD1Q9GZZ0 328 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 ANKMY1Q9P2S6 941 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 CDC14AQ9UNH5 594 aa11.14□□□□□ -0.63
CLK3-226ENST00000569406 ARHGEF35A5YM69 484 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 PRR23AA6NEV1 266 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 NOL3O60936 208 aaKnown RBP11.13□□□□□ -0.63
CLK3-226ENST00000569406 ECT2LQ008S8 904 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 FCHO2Q0JRZ9 810 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 LDLRAP1Q5SW96 308 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 RNF111Q6ZNA4 994 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 SETD3Q86TU7 594 aaPredicted RBP11.13□□□□□ -0.63
CLK3-226ENST00000569406 TTLQ8NG68 377 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 DCPSQ96C86 337 aaKnown RBP11.13□□□□□ -0.63
CLK3-226ENST00000569406 ISOC1Q96CN7 298 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 RANBP9Q96S59 729 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 ROPN1BQ9BZX4 212 aaPredicted RBP11.13□□□□□ -0.63
CLK3-226ENST00000569406 ZNF696Q9H7X3 374 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 ROPN1Q9HAT0 212 aaPredicted RBP11.13□□□□□ -0.63
CLK3-226ENST00000569406 ZNF70Q9UC06 446 aaPredicted RBP11.13□□□□□ -0.63
CLK3-226ENST00000569406 UGT2A1Q9Y4X1 527 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 A0A1W2PQ72 361 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 CLRN2A0PK11 232 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 TCP10L2B9ZVM9 353 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 RGS13O14921 159 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 KRT3P12035 628 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 ACTN1P12814 892 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 RARGP13631 454 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 HOXA7P31268 230 aaPredicted RBP11.13□□□□□ -0.63
CLK3-226ENST00000569406 CASP4P49662 377 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 TRPC3Q13507 836 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 TMED2Q15363 201 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 TNFAIP8L3Q5GJ75 292 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 SCARA3Q6AZY7 606 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 RSBN1LQ6PCB5 846 aaPredicted RBP11.13□□□□□ -0.63
CLK3-226ENST00000569406 C1orf186Q6ZWK4 172 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 FRA10AC1Q70Z53 315 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 KCTD20Q7Z5Y7 419 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 SNX29P2Q8IUI4 249 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 ADAMTS16Q8TE57 1224 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 CFAP36Q96G28 342 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 EIF2AK1Q9BQI3 630 aaKnown RBP11.13□□□□□ -0.63
CLK3-226ENST00000569406 STRA6Q9BX79 667 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 SMARCAD1Q9H4L7 1026 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 NARFLQ9H6Q4 476 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 COL20A1Q9P218 1284 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 VPS4AQ9UN37 437 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 PCDHB13Q9Y5F0 798 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 SLC26A3P40879 764 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 POLR2GP62487 172 aaKnown RBP eCLIP11.13□□□□□ -0.63
CLK3-226ENST00000569406 XIAPP98170 497 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 TRAF2Q12933 501 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 SPDYE2Q495Y8 402 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 DUPD1Q68J44 220 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 RINT1Q6NUQ1 792 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 LYPD8Q6UX82 237 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 ZDHHC24Q6UX98 284 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 DSG4Q86SJ6 1040 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 JAMLQ86YT9 394 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 ANKRD35Q8N283 1001 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 ASCC1Q8N9N2 400 aaKnown RBP11.13□□□□□ -0.63
CLK3-226ENST00000569406 SLAIN1Q8ND83 568 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 SHKBP1Q8TBC3 707 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 SNX19Q92543 992 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 HSPH1Q92598 858 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 SYN2Q92777 582 aaPredicted RBP11.13□□□□□ -0.63
CLK3-226ENST00000569406 RUNDC3BQ96NL0 473 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 ADAM33Q9BZ11 813 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 TMEM39BQ9GZU3 492 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 DEFB129Q9H1M3 183 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 FANCFQ9NPI8 374 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms