RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 FAM171BQ6P995 826 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 TRMT10BQ6PF06 316 aaKnown RBP20.92■□□□□ 0.94
CLN3-230ENST00000568076 LRRC6Q86X45 466 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 CTAGE3PQ8IX95 158 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 CCDC63Q8NA47 563 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 COLGALT1Q8NBJ5 622 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 LRRC8CQ8TDW0 803 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 ZNF75CPQ92670 426 aaPredicted RBP20.92■□□□□ 0.94
CLN3-230ENST00000568076 PGAP3Q96FM1 320 aaPredicted RBP20.92■□□□□ 0.94
CLN3-230ENST00000568076 ADAM2Q99965 735 aa20.92■□□□□ 0.94
CLN3-230ENST00000568076 TRMT13Q9NUP7 481 aaKnown RBP20.92■□□□□ 0.94
CLN3-230ENST00000568076 TM9SF1O15321 606 aa20.91■□□□□ 0.94
CLN3-230ENST00000568076 UGT1A9O60656 530 aa20.91■□□□□ 0.94
CLN3-230ENST00000568076 DNAJC8O75937 253 aaPredicted RBP20.91■□□□□ 0.94
CLN3-230ENST00000568076 RPLP2P05387 115 aaKnown RBP20.91■□□□□ 0.94
CLN3-230ENST00000568076 FDFT1P37268 417 aa20.91■□□□□ 0.94
CLN3-230ENST00000568076 NEK3P51956 506 aa20.91■□□□□ 0.94
CLN3-230ENST00000568076 WASHC5Q12768 1159 aa20.91■□□□□ 0.94
CLN3-230ENST00000568076 PDK1Q15118 436 aa20.91■□□□□ 0.94
CLN3-230ENST00000568076 EDEM1Q92611 657 aa20.91■□□□□ 0.94
CLN3-230ENST00000568076 TMEM209Q96SK2 561 aa20.91■□□□□ 0.94
CLN3-230ENST00000568076 UGT1A7Q9HAW7 530 aa20.91■□□□□ 0.94
CLN3-230ENST00000568076 UGT1A10Q9HAW8 530 aa20.91■□□□□ 0.94
CLN3-230ENST00000568076 UGT1A8Q9HAW9 530 aa20.91■□□□□ 0.94
CLN3-230ENST00000568076 XAB2Q9HCS7 855 aaKnown RBP20.91■□□□□ 0.94
CLN3-230ENST00000568076 FBXW11Q9UKB1 542 aa20.91■□□□□ 0.94
CLN3-230ENST00000568076 MAD1L1Q9Y6D9 718 aa20.91■□□□□ 0.94
CLN3-230ENST00000568076 HTTP42858 3142 aa20.91■□□□□ 0.94
CLN3-230ENST00000568076 RASSF9O75901 435 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 ERCC2P18074 760 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 AIF1P55008 147 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 TRIM71Q2Q1W2 868 aaKnown RBP20.9■□□□□ 0.94
CLN3-230ENST00000568076 RNF43Q68DV7 783 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 ECHDC2Q86YB7 292 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 FITM2Q8N6M3 262 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 ANKLE1Q8NAG6 615 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 THOC1Q96FV9 657 aaKnown RBP20.9■□□□□ 0.94
CLN3-230ENST00000568076 PKMYT1Q99640 499 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 ACBD6Q9BR61 282 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 SLC40A1Q9NP59 571 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 HAUS2Q9NVX0 235 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 DDIT4Q9NX09 232 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 ZNF180Q9UJW8 692 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 ABT1Q9ULW3 272 aaKnown RBP20.9■□□□□ 0.94
CLN3-230ENST00000568076 INPP5FQ9Y2H2 1132 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.9■□□□□ 0.94
CLN3-230ENST00000568076 TMEM88BA6NKF7 163 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 CYP11A1P05108 521 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 ITGB1P05556 798 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 GSTA2P09210 222 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 CSH1P0DML2 217 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 CSH2P0DML3 217 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 PYGBP11216 843 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 PRKAR2AP13861 404 aaKnown RBP20.9■□□□□ 0.94
CLN3-230ENST00000568076 ELNP15502 786 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 BDNFP23560 247 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 INTS6LQ5JSJ4 861 aaKnown RBP20.9■□□□□ 0.94
CLN3-230ENST00000568076 TTC39BQ5VTQ0 682 aaPredicted RBP20.9■□□□□ 0.94
CLN3-230ENST00000568076 PDCD7Q8N8D1 485 aaKnown RBP20.9■□□□□ 0.94
CLN3-230ENST00000568076 CCNYQ8ND76 341 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 OR10T2Q8NGX3 314 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 GSDMBQ8TAX9 411 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 APOPT1Q96IL0 206 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 SEPT10Q9P0V9 454 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 KLHL14Q9P2G3 628 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 PCDHA11Q9Y5I1 949 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 BRCA2P51587 3418 aa20.9■□□□□ 0.94
CLN3-230ENST00000568076 WDR91A4D1P6 747 aa20.89■□□□□ 0.93
CLN3-230ENST00000568076 TRIM49D1C9J1S8 452 aa20.89■□□□□ 0.93
CLN3-230ENST00000568076 F8W810 466 aa20.89■□□□□ 0.93
CLN3-230ENST00000568076 M0QZQ0 153 aa20.89■□□□□ 0.93
CLN3-230ENST00000568076 LPXNO60711 386 aa20.89■□□□□ 0.93
CLN3-230ENST00000568076 OPHN1O60890 802 aa20.89■□□□□ 0.93
CLN3-230ENST00000568076 ETV4P43268 484 aa20.89■□□□□ 0.93
CLN3-230ENST00000568076 GRIK3Q13003 919 aa20.89■□□□□ 0.93
CLN3-230ENST00000568076 LRRTM3Q86VH5 581 aa20.89■□□□□ 0.93
CLN3-230ENST00000568076 ZNF567Q8N184 647 aa20.89■□□□□ 0.93
CLN3-230ENST00000568076 PLCD4Q9BRC7 762 aa20.89■□□□□ 0.93
CLN3-230ENST00000568076 COLEC11Q9BWP8 271 aa20.89■□□□□ 0.93
CLN3-230ENST00000568076 COL4A4P53420 1690 aaPredicted RBP20.88■□□□□ 0.93
CLN3-230ENST00000568076 FAM159BA6NKW6 160 aa20.88■□□□□ 0.93
CLN3-230ENST00000568076 PSMB4P28070 264 aa20.88■□□□□ 0.93
CLN3-230ENST00000568076 CST5P28325 142 aaPredicted RBP20.88■□□□□ 0.93
CLN3-230ENST00000568076 SLC20A2Q08357 652 aa20.88■□□□□ 0.93
CLN3-230ENST00000568076 TUSC3Q13454 348 aa20.88■□□□□ 0.93
CLN3-230ENST00000568076 PM20D1Q6GTS8 502 aa20.88■□□□□ 0.93
CLN3-230ENST00000568076 RXFP1Q9HBX9 757 aa20.88■□□□□ 0.93
CLN3-230ENST00000568076 PIH1D1Q9NWS0 290 aaKnown RBP20.88■□□□□ 0.93
CLN3-230ENST00000568076 SNX10Q9Y5X0 201 aa20.88■□□□□ 0.93
CLN3-230ENST00000568076 PPP1R12AO14974 1030 aaPredicted RBP20.88■□□□□ 0.93
CLN3-230ENST00000568076 DHRS4L1P0CG22 281 aa20.88■□□□□ 0.93
CLN3-230ENST00000568076 MLNP12872 115 aa20.88■□□□□ 0.93
CLN3-230ENST00000568076 ALADP13716 330 aa20.88■□□□□ 0.93
CLN3-230ENST00000568076 CDK16Q00536 496 aa20.88■□□□□ 0.93
CLN3-230ENST00000568076 SEPT7Q16181 437 aaKnown RBP20.88■□□□□ 0.93
CLN3-230ENST00000568076 LRRC8BQ6P9F7 803 aa20.88■□□□□ 0.93
CLN3-230ENST00000568076 OTOAQ7RTW8 1153 aa20.88■□□□□ 0.93
CLN3-230ENST00000568076 NPWQ8N729 165 aa20.88■□□□□ 0.93
CLN3-230ENST00000568076 OXNAD1Q96HP4 312 aaPredicted RBP20.88■□□□□ 0.93
CLN3-230ENST00000568076 EIF2B3Q9NR50 452 aaKnown RBP20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms