RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 ZFHX2Q9C0A1 2572 aaPredicted RBP13.96□□□□□ -0.17
CLK3-218ENST00000566926 A0A087X0T9 212 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 K7ESF4 209 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 PAPSS1O43252 624 aaPredicted RBP13.96□□□□□ -0.17
CLK3-218ENST00000566926 KIF5CO60282 957 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 GFRA3O60609 400 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 LILRB5O75023 590 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 FAM228BP0C875 321 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 PNMA6AP0CW24 399 aaPredicted RBP13.96□□□□□ -0.17
CLK3-218ENST00000566926 MAGEA1P43355 309 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 SLC11A2P49281 568 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 DGKGP49619 791 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 TBX4P57082 545 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 KDSRQ06136 332 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 GFPT1Q06210 699 aaPredicted RBP13.96□□□□□ -0.17
CLK3-218ENST00000566926 C2orf27AQ580R0 203 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 ALKBH5Q6P6C2 394 aaKnown RBP13.96□□□□□ -0.17
CLK3-218ENST00000566926 TRMT11Q7Z4G4 463 aaKnown RBP13.96□□□□□ -0.17
CLK3-218ENST00000566926 LONP2Q86WA8 852 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 REXO1L1PQ8IX06 675 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 FAM217AQ8IXS0 508 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 WDTC1Q8N5D0 677 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 TERB1Q8NA31 727 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 C1orf131Q8NDD1 294 aaKnown RBP13.96□□□□□ -0.17
CLK3-218ENST00000566926 ACRBPQ8NEB7 543 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 SLC30A5Q8TAD4 765 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 USP33Q8TEY7 942 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 EZH1Q92800 747 aaPredicted RBP13.96□□□□□ -0.17
CLK3-218ENST00000566926 AZIN2Q96A70 460 aa13.96□□□□□ -0.17
CLK3-218ENST00000566926 DDX50Q9BQ39 737 aaKnown RBP13.96□□□□□ -0.17
CLK3-218ENST00000566926 TRMT1Q9NXH9 659 aaKnown RBP13.96□□□□□ -0.17
CLK3-218ENST00000566926 PRR23AA6NEV1 266 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 BTNL10A8MVZ5 291 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 PJA2O43164 708 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 HSF2BPO75031 334 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 LSM8O95777 96 aaKnown RBP13.95□□□□□ -0.18
CLK3-218ENST00000566926 PENKP01210 267 aaPredicted RBP13.95□□□□□ -0.18
CLK3-218ENST00000566926 IGLV3-27P01718 113 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 CDH5P33151 784 aaPredicted RBP13.95□□□□□ -0.18
CLK3-218ENST00000566926 SEC13P55735 322 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 DMC1Q14565 340 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 MPPE1Q53F39 396 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 EOGTQ5NDL2 527 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 CCDC122Q5T0U0 273 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 ADGRF1Q5T601 910 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 OR6B2Q6IFH4 312 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 PKN3Q6P5Z2 889 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 NYAP1Q6ZVC0 841 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 NOP9Q86U38 636 aaKnown RBP13.95□□□□□ -0.18
CLK3-218ENST00000566926 WDR5BQ86VZ2 330 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 PHTF2Q8N3S3 785 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 RNF10Q8N5U6 811 aaKnown RBP13.95□□□□□ -0.18
CLK3-218ENST00000566926 DQX1Q8TE96 717 aaKnown RBP13.95□□□□□ -0.18
CLK3-218ENST00000566926 DDI1Q8WTU0 396 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 TRIM11Q96F44 468 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 CPXM1Q96SM3 734 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 SLC2A11Q9BYW1 496 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 TMEM51Q9NW97 253 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 STOML2Q9UJZ1 356 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 RAB23Q9ULC3 237 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 MMP17Q9ULZ9 603 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 NENFQ9UMX5 172 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 NAALADL1Q9UQQ1 740 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 TLR6Q9Y2C9 796 aa13.95□□□□□ -0.18
CLK3-218ENST00000566926 REXO2Q9Y3B8 237 aaKnown RBP13.95□□□□□ -0.18
CLK3-218ENST00000566926 TYW5A2RUC4 315 aaKnown RBP13.94□□□□□ -0.18
CLK3-218ENST00000566926 DDX3XO00571 662 aaKnown RBP eCLIP13.94□□□□□ -0.18
CLK3-218ENST00000566926 IRAK2O43187 625 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 MSI1O43347 362 aaKnown RBP13.94□□□□□ -0.18
CLK3-218ENST00000566926 APBB3O95704 486 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 APOEP02649 317 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 FYNP06241 537 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 H2AFZP0C0S5 128 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 GBP1P32455 592 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 TIE1P35590 1138 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 FNTBP49356 437 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 MTA1Q13330 715 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 IFI16Q16666 785 aaKnown RBP13.94□□□□□ -0.18
CLK3-218ENST00000566926 FYB2Q5VWT5 728 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 H2AFVQ71UI9 128 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 ERICH1Q86X53 443 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 ZNF557Q8N988 423 aaPredicted RBP13.94□□□□□ -0.18
CLK3-218ENST00000566926 UBE2Q2Q8WVN8 375 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 DDX1Q92499 740 aaKnown RBP13.94□□□□□ -0.18
CLK3-218ENST00000566926 C18orf8Q96DM3 657 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 TMA16Q96EY4 203 aaKnown RBP13.94□□□□□ -0.18
CLK3-218ENST00000566926 EPC1Q9H2F5 836 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 SEPT11Q9NVA2 429 aaKnown RBP13.94□□□□□ -0.18
CLK3-218ENST00000566926 RRN3Q9NYV6 651 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 SLC12A6Q9UHW9 1150 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 FBXO10Q9UK96 956 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 SLC27A6Q9Y2P4 619 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 STARD13Q9Y3M8 1113 aa13.94□□□□□ -0.18
CLK3-218ENST00000566926 A0A0A6YYK5 440 aaPredicted RBP13.93□□□□□ -0.18
CLK3-218ENST00000566926 ANKRD62A6NC57 917 aa13.93□□□□□ -0.18
CLK3-218ENST00000566926 USP27XA6NNY8 438 aa13.93□□□□□ -0.18
CLK3-218ENST00000566926 ACSL4O60488 711 aa13.93□□□□□ -0.18
CLK3-218ENST00000566926 RTN2O75298 545 aa13.93□□□□□ -0.18
CLK3-218ENST00000566926 ALDH1A2O94788 518 aa13.93□□□□□ -0.18
CLK3-218ENST00000566926 CISD3P0C7P0 127 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms