RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PPP1R2P3Q6NXS1 205 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 FAM131BQ86XD5 332 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 CENPIQ92674 756 aaPredicted RBP20.28■□□□□ 0.84
CLN3-225ENST00000566824 CD101Q93033 1021 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 AZIN2Q96A70 460 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 MAGEB5Q9BZ81 275 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 SIT1Q9Y3P8 196 aa20.28■□□□□ 0.84
CLN3-225ENST00000566824 TMEM191CA6NGB0 347 aa20.27■□□□□ 0.84
CLN3-225ENST00000566824 TULP3O75386 442 aa20.27■□□□□ 0.84
CLN3-225ENST00000566824 SDC4P31431 198 aa20.27■□□□□ 0.84
CLN3-225ENST00000566824 CCR1P32246 355 aa20.27■□□□□ 0.84
CLN3-225ENST00000566824 CHKAP35790 457 aa20.27■□□□□ 0.84
CLN3-225ENST00000566824 SLC11A2P49281 568 aa20.27■□□□□ 0.84
CLN3-225ENST00000566824 HDAC4P56524 1084 aa20.27■□□□□ 0.84
CLN3-225ENST00000566824 MS4A13Q5J8X5 152 aa20.27■□□□□ 0.84
CLN3-225ENST00000566824 ARTNQ5T4W7 220 aa20.27■□□□□ 0.84
CLN3-225ENST00000566824 C14orf80Q86SX3 495 aa20.27■□□□□ 0.84
CLN3-225ENST00000566824 MSANTD3Q96H12 275 aa20.27■□□□□ 0.84
CLN3-225ENST00000566824 PRMT1Q99873 361 aaKnown RBP20.27■□□□□ 0.84
CLN3-225ENST00000566824 LMAN1LQ9HAT1 526 aa20.27■□□□□ 0.84
CLN3-225ENST00000566824 PARVAQ9NVD7 372 aa20.27■□□□□ 0.84
CLN3-225ENST00000566824 ARHGEF38Q9NXL2 777 aa20.27■□□□□ 0.84
CLN3-225ENST00000566824 AKR1B10O60218 316 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 CACNG3O60359 315 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 PAGE1O75459 146 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 CISD3P0C7P0 127 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 TACR2P21452 398 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 HOXD9P28356 352 aaPredicted RBP20.27■□□□□ 0.83
CLN3-225ENST00000566824 AVPR2P30518 371 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 RDXP35241 583 aaKnown RBP20.27■□□□□ 0.83
CLN3-225ENST00000566824 IRAK1P51617 712 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 CLCN5P51795 746 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 ZNF143P52747 638 aaPredicted RBP20.27■□□□□ 0.83
CLN3-225ENST00000566824 RPS24P62847 133 aaKnown RBP20.27■□□□□ 0.83
CLN3-225ENST00000566824 CCINQ13939 588 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 DCUN1D2Q6PH85 259 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 Q6ZS52 159 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 CFAP52Q8N1V2 620 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 ARFGAP1Q8N6T3 406 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 ATP6V0D2Q8N8Y2 350 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 FAM172AQ8WUF8 416 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 CLDN23Q96B33 292 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 BTN2A3PQ96KV6 586 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 CCDC42Q96M95 316 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 PANX2Q96RD6 677 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 TKTL2Q9H0I9 626 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 DEF6Q9H4E7 631 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 WDCPQ9H6R7 721 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 HS3ST4Q9Y661 456 aa20.27■□□□□ 0.83
CLN3-225ENST00000566824 CACNA1IQ9P0X4 2223 aa20.26■□□□□ 0.83
CLN3-225ENST00000566824 MYO18AQ92614 2054 aaKnown RBP20.26■□□□□ 0.83
CLN3-225ENST00000566824 F9P00740 461 aa20.26■□□□□ 0.83
CLN3-225ENST00000566824 CYP1A2P05177 515 aa20.26■□□□□ 0.83
CLN3-225ENST00000566824 MYBL1P10243 752 aa20.26■□□□□ 0.83
CLN3-225ENST00000566824 FECHP22830 423 aa20.26■□□□□ 0.83
CLN3-225ENST00000566824 GAS6Q14393 721 aa20.26■□□□□ 0.83
CLN3-225ENST00000566824 PKN3Q6P5Z2 889 aa20.26■□□□□ 0.83
CLN3-225ENST00000566824 LGI2Q8N0V4 545 aa20.26■□□□□ 0.83
CLN3-225ENST00000566824 WFDC5Q8TCV5 224 aa20.26■□□□□ 0.83
CLN3-225ENST00000566824 DDI1Q8WTU0 396 aa20.26■□□□□ 0.83
CLN3-225ENST00000566824 BTBD6Q96KE9 485 aa20.26■□□□□ 0.83
CLN3-225ENST00000566824 OSBPL6Q9BZF3 934 aa20.26■□□□□ 0.83
CLN3-225ENST00000566824 GRPEL1Q9HAV7 217 aa20.26■□□□□ 0.83
CLN3-225ENST00000566824 DNAJC17Q9NVM6 304 aaKnown RBP20.26■□□□□ 0.83
CLN3-225ENST00000566824 FBXO10Q9UK96 956 aa20.26■□□□□ 0.83
CLN3-225ENST00000566824 MRPS17Q9Y2R5 130 aaKnown RBP20.26■□□□□ 0.83
CLN3-225ENST00000566824 K7EQS6 105 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 TBL1XO60907 577 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 SLC2A3P11169 496 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 CHRM1P11229 460 aaPredicted RBP20.25■□□□□ 0.83
CLN3-225ENST00000566824 MPPE1Q53F39 396 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 BRMS1LQ5PSV4 323 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 DAB2IPQ5VWQ8 1189 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 CHSY1Q86X52 802 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 CIR1Q86X95 450 aaPredicted RBP20.25■□□□□ 0.83
CLN3-225ENST00000566824 SUGP1Q8IWZ8 645 aaKnown RBP20.25■□□□□ 0.83
CLN3-225ENST00000566824 CCDC185Q8N715 623 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 IGSF8Q969P0 613 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 TMA16Q96EY4 203 aaKnown RBP20.25■□□□□ 0.83
CLN3-225ENST00000566824 TRIM11Q96F44 468 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 PNKPQ96T60 521 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 NELL2Q99435 816 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 CNPY3Q9BT09 278 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 SIK2Q9H0K1 926 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 ARHGEF4Q9NR80 690 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 POLR3BQ9NW08 1133 aaPredicted RBP20.25■□□□□ 0.83
CLN3-225ENST00000566824 C2orf42Q9NWW7 574 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 STIM2Q9P246 746 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 HCN2Q9UL51 889 aa20.25■□□□□ 0.83
CLN3-225ENST00000566824 DOCK4Q8N1I0 1966 aa20.24■□□□□ 0.83
CLN3-225ENST00000566824 ANKRD62A6NC57 917 aa20.24■□□□□ 0.83
CLN3-225ENST00000566824 SOWAHDA6NJG2 315 aa20.24■□□□□ 0.83
CLN3-225ENST00000566824 KAT7O95251 611 aa20.24■□□□□ 0.83
CLN3-225ENST00000566824 HOXC13P31276 330 aa20.24■□□□□ 0.83
CLN3-225ENST00000566824 AMPD2Q01433 879 aa20.24■□□□□ 0.83
CLN3-225ENST00000566824 GRSF1Q12849 480 aaKnown RBP eCLIP20.24■□□□□ 0.83
CLN3-225ENST00000566824 AUHQ13825 339 aaKnown RBP20.24■□□□□ 0.83
CLN3-225ENST00000566824 EMC10Q5UCC4 262 aa20.24■□□□□ 0.83
CLN3-225ENST00000566824 RNF43Q68DV7 783 aa20.24■□□□□ 0.83
CLN3-225ENST00000566824 FBXL22Q6P050 247 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms