RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 MS4A13Q5J8X5 152 aa21.36■■□□□ 1.01
CLN3-212ENST00000564574 ADGRF1Q5T601 910 aa21.36■■□□□ 1.01
CLN3-212ENST00000564574 MEI1Q5TIA1 1274 aa21.36■■□□□ 1.01
CLN3-212ENST00000564574 PARM1Q6UWI2 310 aa21.36■■□□□ 1.01
CLN3-212ENST00000564574 CPXM2Q8N436 756 aa21.36■■□□□ 1.01
CLN3-212ENST00000564574 UBL4BQ8N7F7 174 aa21.36■■□□□ 1.01
CLN3-212ENST00000564574 TTC16Q8NEE8 873 aa21.36■■□□□ 1.01
CLN3-212ENST00000564574 RIN3Q8TB24 985 aa21.36■■□□□ 1.01
CLN3-212ENST00000564574 RPGRIP1Q96KN7 1286 aa21.36■■□□□ 1.01
CLN3-212ENST00000564574 ANLNQ9NQW6 1124 aa21.36■■□□□ 1.01
CLN3-212ENST00000564574 PCDHA3Q9Y5H8 950 aa21.36■■□□□ 1.01
CLN3-212ENST00000564574 HS3ST4Q9Y661 456 aa21.36■■□□□ 1.01
CLN3-212ENST00000564574 I6L893 689 aaPredicted RBP21.35■■□□□ 1.01
CLN3-212ENST00000564574 PSMC3P17980 439 aa21.35■■□□□ 1.01
CLN3-212ENST00000564574 SP100P23497 879 aaPredicted RBP21.35■■□□□ 1.01
CLN3-212ENST00000564574 GJC1P36383 396 aa21.35■■□□□ 1.01
CLN3-212ENST00000564574 FCHO2Q0JRZ9 810 aa21.35■■□□□ 1.01
CLN3-212ENST00000564574 DPYSL2Q16555 572 aa21.35■■□□□ 1.01
CLN3-212ENST00000564574 PIK3R6Q5UE93 754 aa21.35■■□□□ 1.01
CLN3-212ENST00000564574 VITQ6UXI7 678 aa21.35■■□□□ 1.01
CLN3-212ENST00000564574 YAF2Q8IY57 180 aa21.35■■□□□ 1.01
CLN3-212ENST00000564574 SLC35F6Q8N357 371 aa21.35■■□□□ 1.01
CLN3-212ENST00000564574 OSCP1Q8WVF1 389 aa21.35■■□□□ 1.01
CLN3-212ENST00000564574 ATXN2LQ8WWM7 1075 aaKnown RBP21.35■■□□□ 1.01
CLN3-212ENST00000564574 FGF14Q92915 247 aa21.35■■□□□ 1.01
CLN3-212ENST00000564574 HES6Q96HZ4 224 aa21.35■■□□□ 1.01
CLN3-212ENST00000564574 LRRC3BQ96PB8 259 aa21.35■■□□□ 1.01
CLN3-212ENST00000564574 DHX35Q9H5Z1 703 aaKnown RBP21.35■■□□□ 1.01
CLN3-212ENST00000564574 IGSF9Q9P2J2 1179 aa21.35■■□□□ 1.01
CLN3-212ENST00000564574 JRKLQ9Y4A0 524 aa21.35■■□□□ 1.01
CLN3-212ENST00000564574 NUMBLQ9Y6R0 609 aa21.35■■□□□ 1.01
CLN3-212ENST00000564574 LOC730098B7Z3J9 87 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 TNNT1P13805 278 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 TACR2P21452 398 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 L1CAMP32004 1257 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 HTR7P34969 479 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 IFNAR2P48551 515 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 GNG11P61952 73 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 PDK2Q15119 407 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 SMTNL2Q2TAL5 461 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 FAM133BQ5BKY9 247 aaKnown RBP21.34■■□□□ 1.01
CLN3-212ENST00000564574 KCNT1Q5JUK3 1230 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 TXNRD3NBQ6F5E7 133 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 NADSYN1Q6IA69 706 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 CHSY1Q86X52 802 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 BBS7Q8IWZ6 715 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 KATNAL2Q8IYT4 538 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 FAM71BQ8TC56 605 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 HSPH1Q92598 858 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 PRMT1Q99873 361 aaKnown RBP21.34■■□□□ 1.01
CLN3-212ENST00000564574 KXD1Q9BQD3 176 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 SIK2Q9H0K1 926 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 TMPRSS4Q9NRS4 437 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.34■■□□□ 1.01
CLN3-212ENST00000564574 OR12D3Q9UGF7 316 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 XPO7Q9UIA9 1087 aaKnown RBP21.34■■□□□ 1.01
CLN3-212ENST00000564574 PRUNE2Q8WUY3 3088 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 DOCK4Q8N1I0 1966 aa21.34■■□□□ 1.01
CLN3-212ENST00000564574 F5H5T6 163 aa21.33■■□□□ 1.01
CLN3-212ENST00000564574 TUBB4AP04350 444 aa21.33■■□□□ 1.01
CLN3-212ENST00000564574 RWDD2BP57060 319 aa21.33■■□□□ 1.01
CLN3-212ENST00000564574 PDGFRLQ15198 375 aa21.33■■□□□ 1.01
CLN3-212ENST00000564574 RPS6KA1Q15418 735 aa21.33■■□□□ 1.01
CLN3-212ENST00000564574 ZFYVE27Q5T4F4 411 aa21.33■■□□□ 1.01
CLN3-212ENST00000564574 RAP1GAP2Q684P5 730 aa21.33■■□□□ 1.01
CLN3-212ENST00000564574 LRRC31Q6UY01 552 aa21.33■■□□□ 1.01
CLN3-212ENST00000564574 VSIG1Q86XK7 387 aa21.33■■□□□ 1.01
CLN3-212ENST00000564574 MAP7D3Q8IWC1 876 aa21.33■■□□□ 1.01
CLN3-212ENST00000564574 ADHFE1Q8IWW8 467 aa21.33■■□□□ 1.01
CLN3-212ENST00000564574 EPAS1Q99814 870 aa21.33■■□□□ 1.01
CLN3-212ENST00000564574 PLA2G2FQ9BZM2 168 aa21.33■■□□□ 1.01
CLN3-212ENST00000564574 GPATCH2LQ9NWQ4 482 aa21.33■■□□□ 1.01
CLN3-212ENST00000564574 DUS2Q9NX74 493 aaKnown RBP21.33■■□□□ 1.01
CLN3-212ENST00000564574 RCOR3Q9P2K3 495 aaPredicted RBP21.33■■□□□ 1.01
CLN3-212ENST00000564574 CHADO15335 359 aa21.32■■□□□ 1
CLN3-212ENST00000564574 DDX3YO15523 660 aaKnown RBP21.32■■□□□ 1
CLN3-212ENST00000564574 KRT1P04264 644 aa21.32■■□□□ 1
CLN3-212ENST00000564574 PEX5P50542 639 aa21.32■■□□□ 1
CLN3-212ENST00000564574 ARSEP51690 589 aa21.32■■□□□ 1
CLN3-212ENST00000564574 CDH6P55285 790 aa21.32■■□□□ 1
CLN3-212ENST00000564574 SEMA3BQ13214 749 aa21.32■■□□□ 1
CLN3-212ENST00000564574 AUHQ13825 339 aaKnown RBP21.32■■□□□ 1
CLN3-212ENST00000564574 KRT81Q14533 505 aa21.32■■□□□ 1
CLN3-212ENST00000564574 CA9Q16790 459 aa21.32■■□□□ 1
CLN3-212ENST00000564574 C5orf22Q49AR2 442 aa21.32■■□□□ 1
CLN3-212ENST00000564574 ATP13A4Q4VNC1 1196 aa21.32■■□□□ 1
CLN3-212ENST00000564574 ODF2Q5BJF6 829 aa21.32■■□□□ 1
CLN3-212ENST00000564574 RABGAP1LQ5R372 815 aa21.32■■□□□ 1
CLN3-212ENST00000564574 NYAP1Q6ZVC0 841 aa21.32■■□□□ 1
CLN3-212ENST00000564574 KCTD6Q8NC69 237 aa21.32■■□□□ 1
CLN3-212ENST00000564574 EXD1Q8NHP7 514 aa21.32■■□□□ 1
CLN3-212ENST00000564574 KRT35Q92764 455 aa21.32■■□□□ 1
CLN3-212ENST00000564574 RBM41Q96IZ5 413 aaKnown RBP21.32■■□□□ 1
CLN3-212ENST00000564574 KCTD15Q96SI1 283 aaPredicted RBP21.32■■□□□ 1
CLN3-212ENST00000564574 TRMT61BQ9BVS5 477 aaKnown RBP21.32■■□□□ 1
CLN3-212ENST00000564574 PPARGC1AQ9UBK2 798 aaKnown RBP21.32■■□□□ 1
CLN3-212ENST00000564574 PACSIN2Q9UNF0 486 aaPredicted RBP21.32■■□□□ 1
CLN3-212ENST00000564574 WNT6Q9Y6F9 365 aa21.32■■□□□ 1
CLN3-212ENST00000564574 GOLGA6L7A0A1B0GV03 622 aa21.31■■□□□ 1
CLN3-212ENST00000564574 TYW5A2RUC4 315 aaKnown RBP21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms