RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 MAK16Q9BXY0 300 aaKnown RBP5.51□□□□□ -1.53
VPS35P1-201ENST00000563400 C1orf21Q9H246 121 aa5.51□□□□□ -1.53
VPS35P1-201ENST00000563400 SMARCAD1Q9H4L7 1026 aa5.51□□□□□ -1.53
VPS35P1-201ENST00000563400 MID1IP1Q9NPA3 183 aa5.51□□□□□ -1.53
VPS35P1-201ENST00000563400 A1CFQ9NQ94 594 aaKnown RBP5.51□□□□□ -1.53
VPS35P1-201ENST00000563400 HOXC10Q9NYD6 342 aa5.51□□□□□ -1.53
VPS35P1-201ENST00000563400 CACNG4Q9UBN1 327 aa5.51□□□□□ -1.53
VPS35P1-201ENST00000563400 CPSF3Q9UKF6 684 aaKnown RBP5.51□□□□□ -1.53
VPS35P1-201ENST00000563400 HPCAL4Q9UM19 191 aa5.51□□□□□ -1.53
VPS35P1-201ENST00000563400 COA3Q9Y2R0 106 aaPredicted RBP5.51□□□□□ -1.53
VPS35P1-201ENST00000563400 NRAPQ86VF7 1730 aa5.51□□□□□ -1.53
VPS35P1-201ENST00000563400 GLI3P10071 1580 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 hCG_1809904A0A1W2PP81 198 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 A0A1W2PPE2 198 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 A0A1W2PR64 198 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 FAM90A20PA6NIJ5 464 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 ERVV-1B6SEH8 477 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 RIPK2O43353 540 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 OPHN1O60890 802 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 NTSR2O95665 410 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 OLFM2O95897 454 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 HEXBP07686 556 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 ANXA6P08133 673 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 SPARCP09486 303 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 SPINK2P20155 84 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 KLRC1P26715 233 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 BMPR1AP36894 532 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 PPARGP37231 505 aaPredicted RBP5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 CAPZA2P47755 286 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 TRPC1P48995 793 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 MRPS5P82675 430 aaKnown RBP5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 MGAT5Q09328 741 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 PTP4A2Q12974 167 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 RAB39AQ14964 217 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 OASLQ15646 514 aaKnown RBP5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 C2orf76Q3KRA6 126 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 TTC39AQ5SRH9 613 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 EMC10Q5UCC4 262 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 KLHL10Q6JEL2 608 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 RINT1Q6NUQ1 792 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 OGFOD3Q6PK18 319 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 OLFM4Q6UX06 510 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 ZNF574Q6ZN55 896 aaPredicted RBP5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 TUSC5Q8IXB3 177 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 RHOT2Q8IXI1 618 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 CDYL2Q8N8U2 506 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 POGLUT1Q8NBL1 392 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 TMEM52Q8NDY8 209 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 FIBINQ8TAL6 211 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 PLEKHO2Q8TD55 490 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 BRSK1Q8TDC3 778 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 ARHGEF2Q92974 986 aaKnown RBP5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 HTATIP2Q9BUP3 242 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 FOXP3Q9BZS1 431 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 LDAHQ9H6V9 325 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 LTB4R2Q9NPC1 389 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 UCKL1Q9NWZ5 548 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 FETUBQ9UGM5 382 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 C2CD2Q9Y426 696 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 POMT1Q9Y6A1 747 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 MEGF6O75095 1541 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 HEG1Q9ULI3 1381 aa5.5□□□□□ -1.53
VPS35P1-201ENST00000563400 RNF123Q5XPI4 1314 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 ZBED9Q6R2W3 1325 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 A0A0B4J203 849 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 TRAV34A0A0B4J273 112 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 MBD3L4A6NDZ8 208 aaPredicted RBP5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 MBD3L3A6NE82 208 aaPredicted RBP5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 FAM170BA6NMN3 283 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 C2orf81A6NN90 581 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 WASH4PA8MWX3 477 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 PRR33A8MZF0 331 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 IGF2BP3O00425 579 aaKnown RBP eCLIP5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 KRIT1O00522 736 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 SCAMP1O15126 338 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 EXOC3O60645 756 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 DIAPH2O60879 1101 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 KIF20AO95235 890 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 MED26O95402 600 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 GLP2RO95838 553 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 PDHA1P08559 390 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 EIF2S2P20042 333 aaKnown RBP5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 CYP7A1P22680 504 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 CPT2P23786 658 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 ADMP35318 185 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 MAGEA10P43363 369 aaPredicted RBP5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 HDAC4P56524 1084 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 EIF4A1P60842 406 aaKnown RBP5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 ROM1Q03395 351 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 CAMK1Q14012 370 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 EZH2Q15910 746 aaKnown RBP5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 SLC5A9Q2M3M2 681 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 SMU1Q2TAY7 513 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 TWISTNBQ3B726 338 aaPredicted RBP5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 SLC44A4Q53GD3 710 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 PLEKHS1Q5SXH7 462 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 FIP1L1Q6UN15 594 aaKnown RBP5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 PET117Q6UWS5 81 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 DNAJC5GQ8N7S2 189 aa5.49□□□□□ -1.53
VPS35P1-201ENST00000563400 KRT23Q9C075 422 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms