RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 MMP8P22894 467 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 OAS2P29728 719 aaKnown RBP9.51□□□□□ -0.89
VPS39-205ENST00000562258 PBLDP30039 288 aaPredicted RBP9.51□□□□□ -0.89
VPS39-205ENST00000562258 ZNF143P52747 638 aaPredicted RBP9.51□□□□□ -0.89
VPS39-205ENST00000562258 MLLT1Q03111 559 aaPredicted RBP9.51□□□□□ -0.89
VPS39-205ENST00000562258 CCDC15Q0P6D6 951 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 CCDC6Q16204 474 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 ANKRD20A3Q5VUR7 823 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 FYB2Q5VWT5 728 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 FBXL19Q6PCT2 694 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 LINGO4Q6UY18 593 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 AFAP1L2Q8N4X5 818 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 PDCD7Q8N8D1 485 aaKnown RBP9.51□□□□□ -0.89
VPS39-205ENST00000562258 AGR3Q8TD06 166 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 FICDQ9BVA6 458 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 NAV1Q8NEY1 1877 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 MTSS1O43312 755 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 ZNF623O75123 536 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 PIGRP01833 764 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 STIP1P31948 543 aaKnown RBP9.51□□□□□ -0.89
VPS39-205ENST00000562258 RFC2P35250 354 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 COILP38432 576 aaPredicted RBP9.51□□□□□ -0.89
VPS39-205ENST00000562258 ITGA8P53708 1063 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 GTF2H3Q13889 308 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 NAPEPLDQ6IQ20 393 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 RAB44Q7Z6P3 723 aaPredicted RBP9.51□□□□□ -0.89
VPS39-205ENST00000562258 FUKQ8N0W3 1084 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 ANKS4BQ8N8V4 417 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 EXD1Q8NHP7 514 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 RIPOR3Q96MK2 946 aa9.51□□□□□ -0.89
VPS39-205ENST00000562258 HNRNPABQ99729 332 aaKnown RBP9.51□□□□□ -0.89
VPS39-205ENST00000562258 UBA2Q9UBT2 640 aaPredicted RBP9.51□□□□□ -0.89
VPS39-205ENST00000562258 AJAP1Q9UKB5 411 aaPredicted RBP9.51□□□□□ -0.89
VPS39-205ENST00000562258 SLC38A8A6NNN8 435 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 RASA4BC9J798 803 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 PAPSS1O43252 624 aaPredicted RBP9.5□□□□□ -0.89
VPS39-205ENST00000562258 RASA4O43374 803 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 KRT38O76015 456 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 ANXA9O76027 345 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 C1RP00736 705 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 MYOGP15173 224 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 TYMPP19971 482 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 RENBPP51606 427 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 CUL1Q13616 776 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 FASTKD1Q53R41 847 aaKnown RBP9.5□□□□□ -0.89
VPS39-205ENST00000562258 RTP2Q5QGT7 225 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 COLGALT1Q8NBJ5 622 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 OMDQ99983 421 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 INTS9Q9NV88 658 aaKnown RBP9.5□□□□□ -0.89
VPS39-205ENST00000562258 TPX2Q9ULW0 747 aaKnown RBP9.5□□□□□ -0.89
VPS39-205ENST00000562258 GOLGA8KD6RF30 607 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 GOLGA8TH3BQL2 631 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 TEX28O15482 410 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 SERPIND1P05546 499 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 KCNE1P15382 129 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 RBL1P28749 1068 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 CARSP49589 748 aaKnown RBP9.5□□□□□ -0.89
VPS39-205ENST00000562258 SETDB1Q15047 1291 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 CES3Q6UWW8 571 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 RNF19BQ6ZMZ0 732 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 C3orf62Q6ZUJ4 267 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 DDX60Q8IY21 1712 aaKnown RBP9.5□□□□□ -0.89
VPS39-205ENST00000562258 DOCK3Q8IZD9 2030 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 LGMNQ99538 433 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 CCSER2Q9H7U1 834 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 CNTN3Q9P232 1028 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 MRFAP1Q9Y605 127 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 F8W8V4 182 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 PTGESO14684 152 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 PAX3P23760 479 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 ADRA1BP35368 520 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 ASPAP45381 313 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 WDR5P61964 334 aaKnown RBP9.5□□□□□ -0.89
VPS39-205ENST00000562258 KLC3Q6P597 504 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 RASSF3Q86WH2 238 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 VSIG1Q86XK7 387 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 NFKBIZQ9BYH8 718 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 PLAAQ9Y263 795 aa9.5□□□□□ -0.89
VPS39-205ENST00000562258 FAM187AA6NFU0 413 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 SNX2O60749 519 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 GJB5O95377 273 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 ZSCAN5DPP0CG00 497 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 GDI1P31150 447 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 MAGEA10P43363 369 aaPredicted RBP9.49□□□□□ -0.89
VPS39-205ENST00000562258 PMS2P54278 862 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 WNT7BP56706 349 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 TAS2R40P59535 323 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 TBX2Q13207 712 aaPredicted RBP9.49□□□□□ -0.89
VPS39-205ENST00000562258 SGCGQ13326 291 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 DHX34Q14147 1143 aaKnown RBP9.49□□□□□ -0.89
VPS39-205ENST00000562258 MARK2Q7KZI7 788 aaKnown RBP9.49□□□□□ -0.89
VPS39-205ENST00000562258 PRUNE1Q86TP1 453 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 ZNF366Q8N895 744 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 ANKLE1Q8NAG6 615 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 ZNF333Q96JL9 665 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 FBXL18Q96ME1 805 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 AVENQ9NQS1 362 aaPredicted RBP9.49□□□□□ -0.89
VPS39-205ENST00000562258 DNPEPQ9ULA0 475 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 ADGRA2Q96PE1 1338 aa9.49□□□□□ -0.89
VPS39-205ENST00000562258 CCDC151A5D8V7 595 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms