RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 DDI1Q8WTU0 396 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 ASIC4Q96FT7 647 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 HAPLN3Q96S86 360 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 BBS2Q9BXC9 721 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 CD320Q9NPF0 282 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 HPS4Q9NQG7 708 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 VCANP13611 3396 aa10.44□□□□□ -0.74
USP3-216ENST00000559873 NEDD8-MDP1E9PL57 170 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 PAGE1O75459 146 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 TFE3P19532 575 aaPredicted RBP10.43□□□□□ -0.74
USP3-216ENST00000559873 TACR2P21452 398 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 ZNF135P52742 658 aaPredicted RBP10.43□□□□□ -0.74
USP3-216ENST00000559873 HADHBP55084 474 aaKnown RBP10.43□□□□□ -0.74
USP3-216ENST00000559873 NAP1L1P55209 391 aaKnown RBP10.43□□□□□ -0.74
USP3-216ENST00000559873 OGDHQ02218 1023 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 SLC44A4Q53GD3 710 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 MS4A13Q5J8X5 152 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 LY6G5CQ5SRR4 150 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 MPP7Q5T2T1 576 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 RAP1GAP2Q684P5 730 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 TPGS1Q6ZTW0 290 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 TPRG1Q6ZUI0 275 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 PSTKQ8IV42 348 aaKnown RBP10.43□□□□□ -0.74
USP3-216ENST00000559873 ADGRG2Q8IZP9 1017 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 CCDC26Q8TAB7 109 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 EDAQ92838 391 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 WBP2Q969T9 261 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 RPRD1AQ96P16 312 aaPredicted RBP10.43□□□□□ -0.74
USP3-216ENST00000559873 EPAS1Q99814 870 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 DESI2Q9BSY9 194 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 LINC00597Q9H2U6 94 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 MFSD1Q9H3U5 465 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 HEBP1Q9NRV9 189 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 CA14Q9ULX7 337 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 F5P12259 2224 aa10.43□□□□□ -0.74
USP3-216ENST00000559873 MYO10Q9HD67 2058 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 A0A1B0GVM2 712 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 TCAF2A6NFQ2 919 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 BTNL10A8MVZ5 291 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 SPECC1L-ADORA2AF8WAN1 911 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 PJA2O43164 708 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 KRT86O43790 486 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 CACNG3O60359 315 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 LRCH4O75427 683 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 PENKP01210 267 aaPredicted RBP10.42□□□□□ -0.74
USP3-216ENST00000559873 KRT7P08729 469 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 TYRP14679 529 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 MIPP30301 263 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 CTHP32929 405 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 HTR7P34969 479 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 GJA4P35212 333 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 ADRA1BP35368 520 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 SLC1A1P43005 524 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 SSR1P43307 286 aaKnown RBP10.42□□□□□ -0.74
USP3-216ENST00000559873 ATXN1P54253 815 aaKnown RBP10.42□□□□□ -0.74
USP3-216ENST00000559873 VCPP55072 806 aaKnown RBP10.42□□□□□ -0.74
USP3-216ENST00000559873 OXCT1P55809 520 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 CCZ1BP86790 482 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 CCZ1P86791 482 aaPredicted RBP10.42□□□□□ -0.74
USP3-216ENST00000559873 ZNF252P-AS1Q0IIN9 211 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 CDH18Q13634 790 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 BOLA3Q53S33 107 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 FAM133BQ5BKY9 247 aaKnown RBP10.42□□□□□ -0.74
USP3-216ENST00000559873 PIK3R6Q5UE93 754 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 NADSYN1Q6IA69 706 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 C11orf63Q6NUN7 778 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 RHBDF2Q6PJF5 856 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 ZNF852Q6ZMS4 543 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 TRIM67Q6ZTA4 783 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 LGI2Q8N0V4 545 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 SIX5Q8N196 739 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 TTC8Q8TAM2 541 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 TMA16Q96EY4 203 aaKnown RBP10.42□□□□□ -0.74
USP3-216ENST00000559873 C1orf74Q96LT6 269 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 NELL2Q99435 816 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 SLC2A11Q9BYW1 496 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 ADAM33Q9BZ11 813 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 TRIM7Q9C029 511 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 SIK2Q9H0K1 926 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 OSGEPQ9NPF4 335 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 CALCOCO1Q9P1Z2 691 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 DEC1Q9P2X7 70 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 USP18Q9UMW8 372 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 HS3ST4Q9Y661 456 aa10.42□□□□□ -0.74
USP3-216ENST00000559873 TICRRQ7Z2Z1 1910 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 TMEM110-MUSTN1A8MSY1 372 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 NCAM2O15394 837 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 ZSCAN12O43309 604 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 SPOPO43791 374 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 TSPAN3O60637 253 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 DRD1P21728 446 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 SLC6A4P31645 630 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 NRG1Q02297 640 aaPredicted RBP10.41□□□□□ -0.74
USP3-216ENST00000559873 GRSF1Q12849 480 aaKnown RBP eCLIP10.41□□□□□ -0.74
USP3-216ENST00000559873 AUHQ13825 339 aaKnown RBP10.41□□□□□ -0.74
USP3-216ENST00000559873 LRRC32Q14392 662 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 MESDQ14696 234 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 E2F5Q15329 346 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 ODF2Q5BJF6 829 aa10.41□□□□□ -0.74
USP3-216ENST00000559873 SH3PXD2AQ5TCZ1 1133 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms