RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 SERPINI1Q99574 410 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 NT5C1AQ9BXI3 368 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 SLC4A5Q9BY07 1137 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 COPG2Q9UBF2 871 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 TSPAN16Q9UKR8 245 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 LCTP09848 1927 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 A0A0A0MRY4 1105 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 A6NJR5 290 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 TMEM114B3SHH9 223 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 TPP1O14773 563 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 SLC22A2O15244 555 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 STK10O94804 968 aaKnown RBP16.74■□□□□ 0.27
SHMT2-231ENST00000557433 SLC26A2P50443 739 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 MTTPP55157 894 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 FAM187BQ17R55 369 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 SFT2D3Q587I9 215 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 OGFRL1Q5TC84 451 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-231ENST00000557433 TMEM110Q86TL2 294 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 KBTBD6Q86V97 674 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 MPP5Q8N3R9 675 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 NAT14Q8WUY8 206 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 ISL2Q96A47 359 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 HPDLQ96IR7 371 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 SPATA13Q96N96 652 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 SORT1Q99523 831 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 PLK2Q9NYY3 685 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 PCDHB12Q9Y5F1 795 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 SPDYE16A6NNV3 312 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-231ENST00000557433 LACTBL1A8MY62 500 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 INO80B-WBP1J3KQ70 363 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 ZNF195O14628 629 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 DENRO43583 198 aaKnown RBP16.74■□□□□ 0.27
SHMT2-231ENST00000557433 CAPN15O75808 1086 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 PENKP01210 267 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-231ENST00000557433 RALBP11234 206 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 ITGAXP20702 1163 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 MSLNQ13421 630 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-231ENST00000557433 PDK3Q15120 406 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 GRTP1Q5TC63 336 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 EEF1DP3Q658K8 133 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 DENND5BQ6ZUT9 1274 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 EGFL6Q8IUX8 553 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 MARVELD2Q8N4S9 558 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 OPTNQ96CV9 577 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 INO80BQ9C086 356 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-231ENST00000557433 TXNDC16Q9P2K2 825 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 RCOR3Q9P2K3 495 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-231ENST00000557433 ADAMTS6Q9UKP5 1117 aa16.74■□□□□ 0.27
SHMT2-231ENST00000557433 LYPLA1O75608 230 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-231ENST00000557433 ITGA2BP08514 1039 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 SERPINB6P35237 376 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 RGS2P41220 211 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 NDST1P52848 882 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 EPHB1P54762 984 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 OSTNP61366 133 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 RBP5P82980 135 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 MBTD1Q05BQ5 628 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 TBL3Q12788 808 aaKnown RBP16.73■□□□□ 0.27
SHMT2-231ENST00000557433 ORC1Q13415 861 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 FRG1Q14331 258 aaKnown RBP16.73■□□□□ 0.27
SHMT2-231ENST00000557433 RALGPS1Q5JS13 557 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 JADE1Q6IE81 842 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 ZFP1Q6P2D0 407 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 MAVSQ7Z434 540 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 ALDH16A1Q8IZ83 802 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 DEFB107AQ8IZN7 70 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 DRAXINQ8NBI3 349 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-231ENST00000557433 CPNE1Q99829 537 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 GPATCH2LQ9NWQ4 482 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 MID2Q9UJV3 735 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 VPS28Q9UK41 221 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 PSMD13Q9UNM6 376 aa16.73■□□□□ 0.27
SHMT2-231ENST00000557433 PFKMP08237 780 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 STAG3L1P0CL83 205 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 COX4I1P13073 169 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 RAG1P15918 1043 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 KCNA4P22459 653 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 ADSLP30566 484 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-231ENST00000557433 GP5P40197 560 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 MAGEA12P43365 314 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 NUMBP49757 651 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 AQP4P55087 323 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 TRIP10Q15642 601 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 PKDCCQ504Y2 493 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 KCNT2Q6UVM3 1135 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 RNF111Q6ZNA4 994 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 SETD3Q86TU7 594 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-231ENST00000557433 C10orf107Q8IVU9 208 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 TFB1MQ8WVM0 346 aaKnown RBP16.72■□□□□ 0.27
SHMT2-231ENST00000557433 HTR3CQ8WXA8 447 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 CENPIQ92674 756 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-231ENST00000557433 MPHOSPH6Q99547 160 aaKnown RBP16.72■□□□□ 0.27
SHMT2-231ENST00000557433 NDNQ99608 321 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 BTBD7Q9P203 1132 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 TMCO1Q9UM00 188 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-231ENST00000557433 WDR27A2RRH5 827 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 KPNA7A9QM74 516 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 ZBTB42B2RXF5 422 aa16.72■□□□□ 0.27
SHMT2-231ENST00000557433 DGKIO75912 1065 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms