RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 TRAPPC10P48553 1259 aa5.22□□□□□ -1.57
SCFD1-221ENST00000556534 TAS2R50P59544 299 aa5.22□□□□□ -1.57
SCFD1-221ENST00000556534 FOXO1Q12778 655 aa5.22□□□□□ -1.57
SCFD1-221ENST00000556534 SF3A3Q12874 501 aaKnown RBP eCLIP5.22□□□□□ -1.57
SCFD1-221ENST00000556534 MTX3Q5HYI7 312 aa5.22□□□□□ -1.57
SCFD1-221ENST00000556534 MORN5Q5VZ52 161 aa5.22□□□□□ -1.57
SCFD1-221ENST00000556534 PAPD7Q5XG87 772 aaKnown RBP5.22□□□□□ -1.57
SCFD1-221ENST00000556534 TANGO2Q6ICL3 276 aa5.22□□□□□ -1.57
SCFD1-221ENST00000556534 SLC44A2Q8IWA5 706 aaPredicted RBP5.22□□□□□ -1.57
SCFD1-221ENST00000556534 MAGEH1Q9H213 219 aa5.22□□□□□ -1.57
SCFD1-221ENST00000556534 PRDM8Q9NQV8 689 aa5.22□□□□□ -1.57
SCFD1-221ENST00000556534 ZNF70Q9UC06 446 aaPredicted RBP5.22□□□□□ -1.57
SCFD1-221ENST00000556534 HEMK1Q9Y5R4 338 aaPredicted RBP5.22□□□□□ -1.57
SCFD1-221ENST00000556534 KCNU1A8MYU2 1149 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 TP73O15350 636 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 INPPL1O15357 1258 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 PPP6R2O75170 966 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 ACTL6BO94805 426 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 PLAUP00749 431 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 IGFBP2P18065 325 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 SOX2P48431 317 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 RPL15P61313 204 aaKnown RBP5.21□□□□□ -1.58
SCFD1-221ENST00000556534 TLE3Q04726 772 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 CCDC38Q502W7 563 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 ZKSCAN2Q63HK3 967 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 ANKRD40Q6AI12 368 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 SULT6B1Q6IMI4 303 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 WDR93Q6P2C0 686 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 CCDC174Q6PII3 467 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 CNGA4Q8IV77 575 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 C16orf71Q8IYS4 520 aaPredicted RBP5.21□□□□□ -1.58
SCFD1-221ENST00000556534 CELF1Q92879 486 aaKnown RBP5.21□□□□□ -1.58
SCFD1-221ENST00000556534 REXO5Q96IC2 774 aaKnown RBP5.21□□□□□ -1.58
SCFD1-221ENST00000556534 ARPC5LQ9BPX5 153 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 PABPC3Q9H361 631 aaKnown RBP5.21□□□□□ -1.58
SCFD1-221ENST00000556534 MLXIPQ9HAP2 919 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 PTPRHQ9HD43 1115 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 NRIP3Q9NQ35 241 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 HERC5Q9UII4 1024 aaKnown RBP5.21□□□□□ -1.58
SCFD1-221ENST00000556534 DAPP1Q9UN19 280 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 LZTS1Q9Y250 596 aa5.21□□□□□ -1.58
SCFD1-221ENST00000556534 PEPDP12955 493 aa5.2□□□□□ -1.58
SCFD1-221ENST00000556534 RPS6KB1P23443 525 aa5.2□□□□□ -1.58
SCFD1-221ENST00000556534 HOXA7P31268 230 aaPredicted RBP5.2□□□□□ -1.58
SCFD1-221ENST00000556534 FOXL2P58012 376 aa5.2□□□□□ -1.58
SCFD1-221ENST00000556534 KLF9Q13886 244 aaPredicted RBP5.2□□□□□ -1.58
SCFD1-221ENST00000556534 Q4G0T1 1027 aa5.2□□□□□ -1.58
SCFD1-221ENST00000556534 TTC22Q5TAA0 569 aa5.2□□□□□ -1.58
SCFD1-221ENST00000556534 ANO7Q6IWH7 933 aa5.2□□□□□ -1.58
SCFD1-221ENST00000556534 ERAP2Q6P179 960 aa5.2□□□□□ -1.58
SCFD1-221ENST00000556534 RBM44Q6ZP01 1051 aaKnown RBP5.2□□□□□ -1.58
SCFD1-221ENST00000556534 SCAMP5Q8TAC9 235 aa5.2□□□□□ -1.58
SCFD1-221ENST00000556534 WIPF2Q8TF74 440 aaPredicted RBP5.2□□□□□ -1.58
SCFD1-221ENST00000556534 GPR78Q96P69 363 aa5.2□□□□□ -1.58
SCFD1-221ENST00000556534 CCDC134Q9H6E4 229 aa5.2□□□□□ -1.58
SCFD1-221ENST00000556534 TRPC5Q9UL62 973 aaPredicted RBP5.2□□□□□ -1.58
SCFD1-221ENST00000556534 B3GNT3Q9Y2A9 372 aa5.2□□□□□ -1.58
SCFD1-221ENST00000556534 BTBD3Q9Y2F9 522 aa5.2□□□□□ -1.58
SCFD1-221ENST00000556534 SPATA31A5Q5VU36 1347 aa5.2□□□□□ -1.58
SCFD1-221ENST00000556534 SPATA31A7Q8IWB4 1347 aa5.2□□□□□ -1.58
SCFD1-221ENST00000556534 SLC22A23A1A5C7 686 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 WDR91A4D1P6 747 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 C2CD4BA6NLJ0 364 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 LARGE1O95461 756 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 CYP3A4P08684 503 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 RFPL3SP0C7P2 107 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 ST6GAL1P15907 406 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 CHKAP35790 457 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 CDK7P50613 346 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 SLC37A1P57057 533 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 AP2B1P63010 937 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 HSF1Q00613 529 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 GHRHRQ02643 423 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 FAM110CQ1W6H9 321 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 ATPAF1Q5TC12 328 aaPredicted RBP5.19□□□□□ -1.58
SCFD1-221ENST00000556534 NFRKBQ6P4R8 1299 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 ZNF474Q6S9Z5 364 aaPredicted RBP5.19□□□□□ -1.58
SCFD1-221ENST00000556534 KLHL17Q6TDP4 642 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 SLC39A5Q6ZMH5 540 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 RAB11FIP2Q7L804 512 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 C1QL2Q7Z5L3 287 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 ADGRF3Q8IZF5 1079 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 ZFPM2Q8WW38 1151 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 C1QTNF7Q9BXJ2 289 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 VPS16Q9H269 839 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 RAB21Q9UL25 225 aa5.19□□□□□ -1.58
SCFD1-221ENST00000556534 MBD3L5A6NJ08 208 aaPredicted RBP5.18□□□□□ -1.58
SCFD1-221ENST00000556534 C3orf70A6NLC5 250 aaPredicted RBP5.18□□□□□ -1.58
SCFD1-221ENST00000556534 ADAM10O14672 748 aa5.18□□□□□ -1.58
SCFD1-221ENST00000556534 TCEA3O75764 348 aa5.18□□□□□ -1.58
SCFD1-221ENST00000556534 CNTN5O94779 1100 aa5.18□□□□□ -1.58
SCFD1-221ENST00000556534 TOP3BO95985 862 aaKnown RBP5.18□□□□□ -1.58
SCFD1-221ENST00000556534 ALDOAP04075 364 aaKnown RBP5.18□□□□□ -1.58
SCFD1-221ENST00000556534 POLE2P56282 527 aa5.18□□□□□ -1.58
SCFD1-221ENST00000556534 RBM6P78332 1123 aaKnown RBP5.18□□□□□ -1.58
SCFD1-221ENST00000556534 MTA1Q13330 715 aa5.18□□□□□ -1.58
SCFD1-221ENST00000556534 GLE1Q53GS7 698 aaKnown RBP5.18□□□□□ -1.58
SCFD1-221ENST00000556534 JMJD6Q6NYC1 403 aaPredicted RBP5.18□□□□□ -1.58
SCFD1-221ENST00000556534 RHPN2Q8IUC4 686 aa5.18□□□□□ -1.58
SCFD1-221ENST00000556534 EXD3Q8N9H8 876 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms