RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 HIF1AQ16665 826 aa10.57□□□□□ -0.72
SCFD1-220ENST00000556486 KNOP1Q1ED39 458 aaKnown RBP10.57□□□□□ -0.72
SCFD1-220ENST00000556486 TDRD10Q5VZ19 366 aaKnown RBP10.57□□□□□ -0.72
SCFD1-220ENST00000556486 TMPRSS7Q7RTY8 843 aa10.57□□□□□ -0.72
SCFD1-220ENST00000556486 CHPFQ8IZ52 775 aa10.57□□□□□ -0.72
SCFD1-220ENST00000556486 OR6B3Q8NGW1 331 aa10.57□□□□□ -0.72
SCFD1-220ENST00000556486 IPO4Q8TEX9 1081 aaKnown RBP10.57□□□□□ -0.72
SCFD1-220ENST00000556486 CCDC127Q96BQ5 260 aa10.57□□□□□ -0.72
SCFD1-220ENST00000556486 DHX58Q96C10 678 aa10.57□□□□□ -0.72
SCFD1-220ENST00000556486 B3GNT5Q9BYG0 378 aa10.57□□□□□ -0.72
SCFD1-220ENST00000556486 ZNF518BQ9C0D4 1074 aa10.57□□□□□ -0.72
SCFD1-220ENST00000556486 DPEP3Q9H4B8 488 aa10.57□□□□□ -0.72
SCFD1-220ENST00000556486 COMMD8Q9NX08 183 aa10.57□□□□□ -0.72
SCFD1-220ENST00000556486 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.57□□□□□ -0.72
SCFD1-220ENST00000556486 ATMQ13315 3056 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 TLDC2A0PJX2 215 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 A8MXQ7 604 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 TGFBR3LH3BV60 316 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 HOXC11O43248 304 aaPredicted RBP10.56□□□□□ -0.72
SCFD1-220ENST00000556486 CILPO75339 1184 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 TNFRSF21O75509 655 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 GNSP15586 552 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 YWHAQP27348 245 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 CYP2J2P51589 502 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 MYL6P60660 151 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 BNC1Q01954 994 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 HLA-BQ31612 363 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 SYCP2LQ5T4T6 812 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 BTBD8Q5XKL5 378 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 ATL3Q6DD88 541 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 PAQR9Q6ZVX9 377 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 TMEM25Q86YD3 366 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 BBS7Q8IWZ6 715 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 EPS8L3Q8TE67 593 aaKnown RBP10.56□□□□□ -0.72
SCFD1-220ENST00000556486 PARD3BQ8TEW8 1205 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 BHMTQ93088 406 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 TNIP3Q96KP6 325 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 UBL7Q96S82 380 aaPredicted RBP10.56□□□□□ -0.72
SCFD1-220ENST00000556486 GPR174Q9BXC1 333 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 CSNK1G1Q9HCP0 422 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 TM7SF3Q9NS93 570 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 DMAC2Q9NW81 257 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 DEC1Q9P2X7 70 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 FOXD3Q9UJU5 478 aaPredicted RBP10.56□□□□□ -0.72
SCFD1-220ENST00000556486 RAI2Q9Y5P3 530 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 SLCO1B1Q9Y6L6 691 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 ZNF462Q96JM2 2506 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 ATP8B3O60423 1300 aa10.56□□□□□ -0.72
SCFD1-220ENST00000556486 A0A1B0GVT2 93 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 PLK4O00444 970 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 KCNK3O14649 394 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 CLIC2O15247 247 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 POLR2DO15514 142 aaKnown RBP10.55□□□□□ -0.72
SCFD1-220ENST00000556486 COCHO43405 550 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 C4BPAP04003 597 aaKnown RBP10.55□□□□□ -0.72
SCFD1-220ENST00000556486 IL9RQ01113 521 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 GAD2Q05329 585 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 TRPC3Q13507 836 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 PREPLQ4J6C6 727 aaPredicted RBP10.55□□□□□ -0.72
SCFD1-220ENST00000556486 HECTD3Q5T447 861 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 MEI1Q5TIA1 1274 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 RESP18Q5W5W9 173 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 DHRS13Q6UX07 377 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 LAYNQ6UX15 382 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 XKR5Q6UX68 686 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 TRMT11Q7Z4G4 463 aaKnown RBP10.55□□□□□ -0.72
SCFD1-220ENST00000556486 ZNF605Q86T29 641 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 FAM35AQ86V20 835 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 NELFCDQ8IXH7 590 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 FUKQ8N0W3 1084 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 CRYBG2Q8N1P7 616 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 TERB1Q8NA31 727 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 SNIP1Q8TAD8 396 aaKnown RBP10.55□□□□□ -0.72
SCFD1-220ENST00000556486 PLEKHO2Q8TD55 490 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 SNX19Q92543 992 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 SNX21Q969T3 373 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 SMARCD1Q96GM5 515 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 TOE1Q96GM8 510 aaKnown RBP10.55□□□□□ -0.72
SCFD1-220ENST00000556486 ZNF419Q96HQ0 510 aaPredicted RBP10.55□□□□□ -0.72
SCFD1-220ENST00000556486 MRGPRX1Q96LB2 322 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 KCNK16Q96T55 309 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 FAM124BQ9H5Z6 455 aaPredicted RBP10.55□□□□□ -0.72
SCFD1-220ENST00000556486 DMAP1Q9NPF5 467 aaPredicted RBP10.55□□□□□ -0.72
SCFD1-220ENST00000556486 DNAJC17Q9NVM6 304 aaKnown RBP10.55□□□□□ -0.72
SCFD1-220ENST00000556486 SUSD2Q9UGT4 822 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 STARD13Q9Y3M8 1113 aa10.55□□□□□ -0.72
SCFD1-220ENST00000556486 TP53BP1Q12888 1972 aaPredicted RBP10.54□□□□□ -0.72
SCFD1-220ENST00000556486 A0A087WV48 116 aa10.54□□□□□ -0.72
SCFD1-220ENST00000556486 A0A1B0GTW7 788 aa10.54□□□□□ -0.72
SCFD1-220ENST00000556486 LRRIQ3A6PVS8 624 aaPredicted RBP10.54□□□□□ -0.72
SCFD1-220ENST00000556486 KCNJ18B7U540 433 aa10.54□□□□□ -0.72
SCFD1-220ENST00000556486 PRRT4C9JH25 899 aa10.54□□□□□ -0.72
SCFD1-220ENST00000556486 NEDD8-MDP1E9PL57 170 aa10.54□□□□□ -0.72
SCFD1-220ENST00000556486 CLDN5O00501 218 aa10.54□□□□□ -0.72
SCFD1-220ENST00000556486 IKBKBO14920 756 aa10.54□□□□□ -0.72
SCFD1-220ENST00000556486 GREM1O60565 184 aa10.54□□□□□ -0.72
SCFD1-220ENST00000556486 EXOC3O60645 756 aa10.54□□□□□ -0.72
SCFD1-220ENST00000556486 ZNF217O75362 1048 aa10.54□□□□□ -0.72
SCFD1-220ENST00000556486 AVPP01185 164 aa10.54□□□□□ -0.72
SCFD1-220ENST00000556486 RPN1P04843 607 aaKnown RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms