RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 TXLNGYQ9BZA5 131 aa15.27■□□□□ 0.04
CUX1-215ENST00000556210 ARAP2Q8WZ64 1704 aa15.27■□□□□ 0.04
CUX1-215ENST00000556210 C3orf70A6NLC5 250 aaPredicted RBP15.27■□□□□ 0.03
CUX1-215ENST00000556210 TPP1O14773 563 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 C22orf31O95567 290 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 NME5P56597 212 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 SLC25A3Q00325 362 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 HIC1Q14526 733 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 UNC5AQ6ZN44 842 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 TTC39CQ8N584 583 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 OXNAD1Q96HP4 312 aaPredicted RBP15.27■□□□□ 0.03
CUX1-215ENST00000556210 MARK4Q96L34 752 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 KCNK16Q96T55 309 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 TINF2Q9BSI4 451 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 LRMDAQ9H2I8 198 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 DENND2DQ9H6A0 471 aaPredicted RBP15.27■□□□□ 0.03
CUX1-215ENST00000556210 CLUHO75153 1309 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 UBA6A0AVT1 1052 aaPredicted RBP15.27■□□□□ 0.03
CUX1-215ENST00000556210 SCNN1GP51170 649 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 OCRLQ01968 901 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 TLDC1Q6P9B6 456 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 RAB3IL1Q8TBN0 382 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 ANKRD27Q96NW4 1050 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 APBA2Q99767 749 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 XAB2Q9HCS7 855 aaKnown RBP15.27■□□□□ 0.03
CUX1-215ENST00000556210 PTPRHQ9HD43 1115 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 ZNF358Q9NW07 568 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 ZMYND8Q9ULU4 1186 aaPredicted RBP15.27■□□□□ 0.03
CUX1-215ENST00000556210 LRCH1Q9Y2L9 728 aa15.27■□□□□ 0.03
CUX1-215ENST00000556210 PMM2O15305 246 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 DCXO43602 365 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 SMNDC1O75940 238 aaKnown RBP eCLIP15.26■□□□□ 0.031e-5■■□□□ 11.9
CUX1-215ENST00000556210 PMLP29590 882 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 NOMO1Q15155 1222 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 OASLQ15646 514 aaKnown RBP15.26■□□□□ 0.03
CUX1-215ENST00000556210 VWA5B1Q5TIE3 1220 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 PDLIM7Q9NR12 457 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 COL22A1Q8NFW1 1626 aaPredicted RBP15.26■□□□□ 0.03
CUX1-215ENST00000556210 ENDOD1O94919 500 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 SMIM10L2AP0DMW4 78 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 SMIM10L2BP0DMW5 78 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 ACADSP16219 412 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 PITX1P78337 314 aaPredicted RBP15.26■□□□□ 0.03
CUX1-215ENST00000556210 FOXD4Q12950 439 aaPredicted RBP15.26■□□□□ 0.03
CUX1-215ENST00000556210 USP4Q13107 963 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 RHBDF2Q6PJF5 856 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 GPR152Q8TDT2 470 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 C12orf42Q96LP6 360 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 DDX50Q9BQ39 737 aaKnown RBP15.26■□□□□ 0.03
CUX1-215ENST00000556210 BTBD10Q9BSF8 475 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 IL1RL2Q9HB29 575 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 KIAA1257Q9ULG3 409 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 hCG_2014768A0A024R1R8 64 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 C2CD4BA6NLJ0 364 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 GIPC1O14908 333 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 PARP6Q2NL67 630 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 MOCOSQ96EN8 888 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 ELMO2Q96JJ3 720 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 CXCL16Q9H2A7 254 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 ABHD16BQ9H3Z7 469 aa15.26■□□□□ 0.03
CUX1-215ENST00000556210 SMIM28A0A1B0GU29 152 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 TM9SF1O15321 606 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 OR1G1P47890 313 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 NSUN2Q08J23 767 aaKnown RBP eCLIP15.25■□□□□ 0.03
CUX1-215ENST00000556210 SOWAHAQ2M3V2 549 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 DCAF4L1Q3SXM0 396 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 LRRC74BQ6ZQY2 392 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 TRIM67Q6ZTA4 783 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 SPATA24Q86W54 205 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 SENP8Q96LD8 212 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 OMDQ99983 421 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 BTBD19C9JJ37 291 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 PFDN1O60925 122 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 SPAG6O75602 509 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 RALBP11234 206 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 SMPD1P17405 629 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 PRAMEP78395 509 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 TSPY1Q01534 308 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 SLC25A11Q02978 314 aaKnown RBP15.25■□□□□ 0.03
CUX1-215ENST00000556210 TARBP2Q15633 366 aaKnown RBP15.25■□□□□ 0.03
CUX1-215ENST00000556210 SLC45A4Q5BKX6 768 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 RNF220Q5VTB9 566 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 GPR142Q7Z601 462 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 ATPAF2Q8N5M1 289 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 P2RY11Q96G91 374 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 SYT15Q9BQS2 421 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 RHOBTB2Q9BYZ6 727 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 LHX5Q9H2C1 402 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 ACTL7BQ9Y614 415 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 C17orf102A2RUQ5 167 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 MAGEA13PA6NCF6 341 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 RRN3P2A6NIE6 340 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 VAPBO95292 243 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 TPBGLP0DKB5 382 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 SPRP35270 261 aaPredicted RBP15.25■□□□□ 0.03
CUX1-215ENST00000556210 SLC34A1Q06495 639 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 TRIP10Q15642 601 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 CLNKQ7Z7G1 428 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 B3GALNT2Q8NCR0 500 aa15.25■□□□□ 0.03
CUX1-215ENST00000556210 CSPG4P5Q96PW8 444 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms